Strain Fitness in Pseudomonas sp. RS175 around PFR28_04541

Experiment: caffeic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04540 and PFR28_04541 are separated by 188 nucleotidesPFR28_04541 and PFR28_04542 overlap by 4 nucleotides PFR28_04540: PFR28_04540 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 5,182,386 to 5,183,573 _04540 PFR28_04541: PFR28_04541 - Cadmium-transporting ATPase, at 5,183,762 to 5,185,657 _04541 PFR28_04542: PFR28_04542 - hypothetical protein, at 5,185,654 to 5,186,706 _04542 Position (kb) 5183 5184 5185 5186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5182.834 kb on + strand, within PFR28_04540at 5182.834 kb on + strand, within PFR28_04540at 5182.834 kb on + strand, within PFR28_04540at 5182.835 kb on - strand, within PFR28_04540at 5182.835 kb on - strand, within PFR28_04540at 5182.835 kb on - strand, within PFR28_04540at 5182.835 kb on - strand, within PFR28_04540at 5182.835 kb on - strand, within PFR28_04540at 5183.009 kb on + strand, within PFR28_04540at 5183.009 kb on + strand, within PFR28_04540at 5183.009 kb on + strand, within PFR28_04540at 5183.009 kb on + strand, within PFR28_04540at 5183.009 kb on + strand, within PFR28_04540at 5183.009 kb on + strand, within PFR28_04540at 5183.010 kb on - strand, within PFR28_04540at 5183.010 kb on - strand, within PFR28_04540at 5183.010 kb on - strand, within PFR28_04540at 5183.010 kb on - strand, within PFR28_04540at 5183.012 kb on + strand, within PFR28_04540at 5183.012 kb on + strand, within PFR28_04540at 5183.012 kb on + strand, within PFR28_04540at 5183.013 kb on - strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.076 kb on + strand, within PFR28_04540at 5183.077 kb on - strand, within PFR28_04540at 5183.077 kb on - strand, within PFR28_04540at 5183.077 kb on - strand, within PFR28_04540at 5183.077 kb on - strand, within PFR28_04540at 5183.077 kb on - strand, within PFR28_04540at 5183.077 kb on - strand, within PFR28_04540at 5183.077 kb on - strand, within PFR28_04540at 5183.089 kb on + strand, within PFR28_04540at 5183.089 kb on + strand, within PFR28_04540at 5183.089 kb on + strand, within PFR28_04540at 5183.089 kb on + strand, within PFR28_04540at 5183.090 kb on - strand, within PFR28_04540at 5183.090 kb on - strand, within PFR28_04540at 5183.090 kb on - strand, within PFR28_04540at 5183.090 kb on - strand, within PFR28_04540at 5183.180 kb on - strand, within PFR28_04540at 5183.191 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.221 kb on + strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.222 kb on - strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.242 kb on + strand, within PFR28_04540at 5183.243 kb on - strand, within PFR28_04540at 5183.243 kb on - strand, within PFR28_04540at 5183.243 kb on - strand, within PFR28_04540at 5183.243 kb on - strand, within PFR28_04540at 5183.243 kb on - strand, within PFR28_04540at 5183.243 kb on - strand, within PFR28_04540at 5183.394 kb on + strand, within PFR28_04540at 5183.394 kb on + strand, within PFR28_04540at 5183.394 kb on + strand, within PFR28_04540at 5183.395 kb on - strand, within PFR28_04540at 5183.395 kb on - strand, within PFR28_04540at 5183.395 kb on - strand, within PFR28_04540at 5183.395 kb on - strand, within PFR28_04540at 5183.395 kb on - strand, within PFR28_04540at 5183.547 kb on + strandat 5183.579 kb on - strandat 5183.579 kb on - strandat 5183.622 kb on + strandat 5183.623 kb on - strandat 5183.645 kb on + strandat 5183.645 kb on + strandat 5183.645 kb on + strandat 5183.645 kb on + strandat 5183.645 kb on + strandat 5183.647 kb on + strandat 5183.647 kb on + strandat 5183.648 kb on - strandat 5183.648 kb on - strandat 5183.660 kb on + strandat 5183.660 kb on + strandat 5183.663 kb on + strandat 5183.664 kb on - strandat 5183.664 kb on - strandat 5183.664 kb on - strandat 5183.707 kb on - strandat 5183.707 kb on - strandat 5183.707 kb on - strandat 5183.707 kb on - strandat 5183.707 kb on - strandat 5183.809 kb on + strandat 5183.810 kb on - strandat 5183.810 kb on - strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.813 kb on + strandat 5183.814 kb on - strandat 5183.814 kb on - strandat 5183.814 kb on - strandat 5183.814 kb on - strandat 5183.814 kb on - strandat 5183.814 kb on - strandat 5183.819 kb on + strandat 5183.819 kb on + strandat 5183.820 kb on - strandat 5183.820 kb on - strandat 5183.820 kb on - strandat 5183.820 kb on - strandat 5183.820 kb on - strandat 5183.836 kb on + strandat 5183.837 kb on - strandat 5183.947 kb on + strandat 5183.947 kb on + strandat 5183.947 kb on + strandat 5183.947 kb on + strandat 5183.948 kb on - strandat 5183.948 kb on - strandat 5183.981 kb on - strand, within PFR28_04541at 5183.981 kb on - strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.191 kb on + strand, within PFR28_04541at 5184.192 kb on - strand, within PFR28_04541at 5184.192 kb on - strand, within PFR28_04541at 5184.192 kb on - strand, within PFR28_04541at 5184.192 kb on - strand, within PFR28_04541at 5184.192 kb on - strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.657 kb on + strand, within PFR28_04541at 5184.658 kb on - strand, within PFR28_04541at 5184.658 kb on - strand, within PFR28_04541at 5184.658 kb on - strand, within PFR28_04541at 5184.658 kb on - strand, within PFR28_04541at 5184.658 kb on - strand, within PFR28_04541at 5184.658 kb on - strand, within PFR28_04541at 5184.658 kb on - strand, within PFR28_04541at 5184.897 kb on + strand, within PFR28_04541at 5184.897 kb on + strand, within PFR28_04541at 5184.898 kb on - strand, within PFR28_04541at 5184.898 kb on - strand, within PFR28_04541at 5184.898 kb on - strand, within PFR28_04541at 5184.898 kb on - strand, within PFR28_04541at 5184.909 kb on + strand, within PFR28_04541at 5184.909 kb on + strand, within PFR28_04541at 5184.910 kb on - strand, within PFR28_04541at 5185.134 kb on - strand, within PFR28_04541at 5185.446 kb on + strand, within PFR28_04541at 5185.447 kb on - strand, within PFR28_04541at 5185.471 kb on + strandat 5185.471 kb on + strandat 5185.606 kb on + strandat 5185.606 kb on + strandat 5185.607 kb on - strandat 5185.607 kb on - strandat 5185.607 kb on - strandat 5186.136 kb on + strand, within PFR28_04542at 5186.171 kb on - strand, within PFR28_04542at 5186.260 kb on + strand, within PFR28_04542at 5186.260 kb on + strand, within PFR28_04542at 5186.270 kb on + strand, within PFR28_04542at 5186.270 kb on + strand, within PFR28_04542at 5186.270 kb on + strand, within PFR28_04542at 5186.271 kb on - strand, within PFR28_04542at 5186.288 kb on + strand, within PFR28_04542at 5186.288 kb on + strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.289 kb on - strand, within PFR28_04542at 5186.340 kb on - strand, within PFR28_04542at 5186.431 kb on + strand, within PFR28_04542at 5186.431 kb on + strand, within PFR28_04542at 5186.468 kb on - strand, within PFR28_04542at 5186.503 kb on + strand, within PFR28_04542at 5186.503 kb on + strand, within PFR28_04542at 5186.503 kb on + strand, within PFR28_04542at 5186.503 kb on + strand, within PFR28_04542at 5186.503 kb on + strand, within PFR28_04542at 5186.503 kb on + strand, within PFR28_04542at 5186.503 kb on + strand, within PFR28_04542at 5186.504 kb on - strand, within PFR28_04542at 5186.504 kb on - strand, within PFR28_04542at 5186.504 kb on - strand, within PFR28_04542at 5186.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction caffeic (C) 2.5 mM
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5,182,834 + PFR28_04540 0.38 -1.4
5,182,834 + PFR28_04540 0.38 -1.8
5,182,834 + PFR28_04540 0.38 -1.4
5,182,835 - PFR28_04540 0.38 +0.3
5,182,835 - PFR28_04540 0.38 -0.6
5,182,835 - PFR28_04540 0.38 -0.5
5,182,835 - PFR28_04540 0.38 -0.1
5,182,835 - PFR28_04540 0.38 -1.4
5,183,009 + PFR28_04540 0.52 +1.0
5,183,009 + PFR28_04540 0.52 +1.1
5,183,009 + PFR28_04540 0.52 -2.6
5,183,009 + PFR28_04540 0.52 -0.4
5,183,009 + PFR28_04540 0.52 -1.0
5,183,009 + PFR28_04540 0.52 +3.6
5,183,010 - PFR28_04540 0.53 -1.6
5,183,010 - PFR28_04540 0.53 -1.6
5,183,010 - PFR28_04540 0.53 +0.3
5,183,010 - PFR28_04540 0.53 -0.4
5,183,012 + PFR28_04540 0.53 -0.4
5,183,012 + PFR28_04540 0.53 -2.6
5,183,012 + PFR28_04540 0.53 +0.1
5,183,013 - PFR28_04540 0.53 -0.5
5,183,076 + PFR28_04540 0.58 -1.7
5,183,076 + PFR28_04540 0.58 +0.1
5,183,076 + PFR28_04540 0.58 -0.5
5,183,076 + PFR28_04540 0.58 -2.8
5,183,076 + PFR28_04540 0.58 -1.1
5,183,076 + PFR28_04540 0.58 -1.1
5,183,076 + PFR28_04540 0.58 -2.1
5,183,076 + PFR28_04540 0.58 +1.0
5,183,076 + PFR28_04540 0.58 +1.0
5,183,076 + PFR28_04540 0.58 -1.3
5,183,076 + PFR28_04540 0.58 -0.3
5,183,076 + PFR28_04540 0.58 +1.1
5,183,076 + PFR28_04540 0.58 -0.2
5,183,076 + PFR28_04540 0.58 -1.1
5,183,076 + PFR28_04540 0.58 -1.4
5,183,077 - PFR28_04540 0.58 -0.5
5,183,077 - PFR28_04540 0.58 -2.4
5,183,077 - PFR28_04540 0.58 -1.0
5,183,077 - PFR28_04540 0.58 -0.3
5,183,077 - PFR28_04540 0.58 +0.3
5,183,077 - PFR28_04540 0.58 -2.7
5,183,077 - PFR28_04540 0.58 -1.1
5,183,089 + PFR28_04540 0.59 +0.6
5,183,089 + PFR28_04540 0.59 -1.0
5,183,089 + PFR28_04540 0.59 +0.9
5,183,089 + PFR28_04540 0.59 -0.5
5,183,090 - PFR28_04540 0.59 -0.5
5,183,090 - PFR28_04540 0.59 -0.0
5,183,090 - PFR28_04540 0.59 -1.0
5,183,090 - PFR28_04540 0.59 +0.3
5,183,180 - PFR28_04540 0.67 -0.6
5,183,191 + PFR28_04540 0.68 -0.8
5,183,221 + PFR28_04540 0.70 -0.6
5,183,221 + PFR28_04540 0.70 -1.9
5,183,221 + PFR28_04540 0.70 -2.9
5,183,221 + PFR28_04540 0.70 -1.8
5,183,221 + PFR28_04540 0.70 -2.4
5,183,221 + PFR28_04540 0.70 -1.7
5,183,221 + PFR28_04540 0.70 -1.4
5,183,221 + PFR28_04540 0.70 +0.9
5,183,222 - PFR28_04540 0.70 -0.8
5,183,222 - PFR28_04540 0.70 -1.6
5,183,222 - PFR28_04540 0.70 -3.7
5,183,222 - PFR28_04540 0.70 -1.5
5,183,222 - PFR28_04540 0.70 -0.1
5,183,222 - PFR28_04540 0.70 +0.7
5,183,222 - PFR28_04540 0.70 -1.5
5,183,222 - PFR28_04540 0.70 -1.3
5,183,222 - PFR28_04540 0.70 -1.3
5,183,222 - PFR28_04540 0.70 -1.1
5,183,222 - PFR28_04540 0.70 -4.6
5,183,242 + PFR28_04540 0.72 -1.4
5,183,242 + PFR28_04540 0.72 -0.6
5,183,242 + PFR28_04540 0.72 -1.4
5,183,242 + PFR28_04540 0.72 -0.5
5,183,242 + PFR28_04540 0.72 -1.0
5,183,242 + PFR28_04540 0.72 -1.0
5,183,242 + PFR28_04540 0.72 -0.6
5,183,242 + PFR28_04540 0.72 -1.7
5,183,243 - PFR28_04540 0.72 -1.1
5,183,243 - PFR28_04540 0.72 -0.8
5,183,243 - PFR28_04540 0.72 -1.0
5,183,243 - PFR28_04540 0.72 -1.9
5,183,243 - PFR28_04540 0.72 -0.8
5,183,243 - PFR28_04540 0.72 -1.0
5,183,394 + PFR28_04540 0.85 -0.0
5,183,394 + PFR28_04540 0.85 -2.2
5,183,394 + PFR28_04540 0.85 -0.7
5,183,395 - PFR28_04540 0.85 -0.1
5,183,395 - PFR28_04540 0.85 -1.1
5,183,395 - PFR28_04540 0.85 -1.2
5,183,395 - PFR28_04540 0.85 +0.9
5,183,395 - PFR28_04540 0.85 -0.5
5,183,547 + -1.6
5,183,579 - +0.2
5,183,579 - -1.4
5,183,622 + -0.5
5,183,623 - -0.8
5,183,645 + -0.8
5,183,645 + -1.0
5,183,645 + -1.5
5,183,645 + -2.1
5,183,645 + -0.9
5,183,647 + -1.5
5,183,647 + -1.6
5,183,648 - +0.1
5,183,648 - +0.3
5,183,660 + -1.6
5,183,660 + -2.1
5,183,663 + -1.5
5,183,664 - -0.3
5,183,664 - -0.2
5,183,664 - -0.3
5,183,707 - -1.4
5,183,707 - +0.9
5,183,707 - -0.7
5,183,707 - +0.9
5,183,707 - -1.1
5,183,809 + -2.2
5,183,810 - -0.6
5,183,810 - -0.8
5,183,813 + +0.9
5,183,813 + +0.9
5,183,813 + +0.5
5,183,813 + -0.7
5,183,813 + +0.8
5,183,813 + +0.9
5,183,813 + +1.3
5,183,813 + -1.1
5,183,813 + -0.3
5,183,814 - -2.4
5,183,814 - -1.0
5,183,814 - -1.3
5,183,814 - -1.0
5,183,814 - +0.6
5,183,814 - +0.4
5,183,819 + -0.4
5,183,819 + +1.1
5,183,820 - +0.5
5,183,820 - +1.2
5,183,820 - -0.2
5,183,820 - +0.2
5,183,820 - -2.3
5,183,836 + -1.3
5,183,837 - +2.0
5,183,947 + +0.2
5,183,947 + -0.1
5,183,947 + +1.0
5,183,947 + +0.5
5,183,948 - +0.3
5,183,948 - +0.7
5,183,981 - PFR28_04541 0.12 -0.6
5,183,981 - PFR28_04541 0.12 +0.1
5,184,191 + PFR28_04541 0.23 +4.1
5,184,191 + PFR28_04541 0.23 +0.7
5,184,191 + PFR28_04541 0.23 -0.0
5,184,191 + PFR28_04541 0.23 +0.2
5,184,191 + PFR28_04541 0.23 -0.4
5,184,191 + PFR28_04541 0.23 +0.5
5,184,191 + PFR28_04541 0.23 +1.4
5,184,191 + PFR28_04541 0.23 +0.3
5,184,191 + PFR28_04541 0.23 +0.5
5,184,191 + PFR28_04541 0.23 +1.1
5,184,192 - PFR28_04541 0.23 +1.0
5,184,192 - PFR28_04541 0.23 +0.5
5,184,192 - PFR28_04541 0.23 -0.0
5,184,192 - PFR28_04541 0.23 -1.5
5,184,192 - PFR28_04541 0.23 +0.6
5,184,657 + PFR28_04541 0.47 +0.1
5,184,657 + PFR28_04541 0.47 +1.1
5,184,657 + PFR28_04541 0.47 -0.3
5,184,657 + PFR28_04541 0.47 +0.6
5,184,657 + PFR28_04541 0.47 +0.9
5,184,657 + PFR28_04541 0.47 -0.7
5,184,657 + PFR28_04541 0.47 -0.1
5,184,657 + PFR28_04541 0.47 -0.8
5,184,657 + PFR28_04541 0.47 +0.6
5,184,657 + PFR28_04541 0.47 -0.8
5,184,657 + PFR28_04541 0.47 +0.9
5,184,658 - PFR28_04541 0.47 -0.6
5,184,658 - PFR28_04541 0.47 -0.4
5,184,658 - PFR28_04541 0.47 -0.2
5,184,658 - PFR28_04541 0.47 -1.3
5,184,658 - PFR28_04541 0.47 -0.1
5,184,658 - PFR28_04541 0.47 -1.2
5,184,658 - PFR28_04541 0.47 -1.1
5,184,897 + PFR28_04541 0.60 +1.0
5,184,897 + PFR28_04541 0.60 -0.3
5,184,898 - PFR28_04541 0.60 -0.0
5,184,898 - PFR28_04541 0.60 +0.1
5,184,898 - PFR28_04541 0.60 -1.4
5,184,898 - PFR28_04541 0.60 -1.1
5,184,909 + PFR28_04541 0.60 +0.2
5,184,909 + PFR28_04541 0.60 +0.6
5,184,910 - PFR28_04541 0.61 +1.1
5,185,134 - PFR28_04541 0.72 -1.3
5,185,446 + PFR28_04541 0.89 +0.2
5,185,447 - PFR28_04541 0.89 +2.1
5,185,471 + -1.6
5,185,471 + +0.2
5,185,606 + -0.9
5,185,606 + +0.3
5,185,607 - +0.7
5,185,607 - +0.6
5,185,607 - -0.5
5,186,136 + PFR28_04542 0.46 -0.2
5,186,171 - PFR28_04542 0.49 -0.6
5,186,260 + PFR28_04542 0.58 -0.3
5,186,260 + PFR28_04542 0.58 -0.5
5,186,270 + PFR28_04542 0.58 +0.7
5,186,270 + PFR28_04542 0.58 +0.1
5,186,270 + PFR28_04542 0.58 +0.8
5,186,271 - PFR28_04542 0.59 -1.1
5,186,288 + PFR28_04542 0.60 +0.7
5,186,288 + PFR28_04542 0.60 -1.3
5,186,289 - PFR28_04542 0.60 +0.2
5,186,289 - PFR28_04542 0.60 -0.2
5,186,289 - PFR28_04542 0.60 +0.3
5,186,289 - PFR28_04542 0.60 -0.5
5,186,289 - PFR28_04542 0.60 +0.5
5,186,289 - PFR28_04542 0.60 -0.8
5,186,289 - PFR28_04542 0.60 +0.4
5,186,289 - PFR28_04542 0.60 -1.3
5,186,340 - PFR28_04542 0.65 -0.4
5,186,431 + PFR28_04542 0.74 +0.3
5,186,431 + PFR28_04542 0.74 +1.2
5,186,468 - PFR28_04542 0.77 +0.9
5,186,503 + PFR28_04542 0.81 +0.7
5,186,503 + PFR28_04542 0.81 +0.6
5,186,503 + PFR28_04542 0.81 -1.9
5,186,503 + PFR28_04542 0.81 -0.6
5,186,503 + PFR28_04542 0.81 -0.1
5,186,503 + PFR28_04542 0.81 +0.4
5,186,503 + PFR28_04542 0.81 +1.3
5,186,504 - PFR28_04542 0.81 -1.1
5,186,504 - PFR28_04542 0.81 -0.2
5,186,504 - PFR28_04542 0.81 -0.2
5,186,628 - -0.3

Or see this region's nucleotide sequence