Strain Fitness in Pseudomonas sp. RS175 around PFR28_03220

Experiment: caffeic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic (C) 2.5 mM
3,727,088	+		PFR28_03219	0.12	+1.5
3,727,088	+		PFR28_03219	0.12	+0.2
3,727,088	+		PFR28_03219	0.12	-0.0
3,727,088	+		PFR28_03219	0.12	-0.9
3,727,089	-		PFR28_03219	0.12	+0.3
3,727,089	-		PFR28_03219	0.12	+0.7
3,727,256	+		PFR28_03219	0.35	+1.6
3,727,257	-		PFR28_03219	0.35	-0.8
3,727,257	-		PFR28_03219	0.35	+1.1
3,727,387	+		PFR28_03219	0.54	-0.6
3,727,388	-		PFR28_03219	0.54	+1.1
3,727,397	+		PFR28_03219	0.55	+0.7
3,727,397	+		PFR28_03219	0.55	+0.3
3,727,397	+		PFR28_03219	0.55	-0.0
3,727,398	-		PFR28_03219	0.55	-0.3
3,727,398	-		PFR28_03219	0.55	+1.1
3,727,398	-		PFR28_03219	0.55	+1.4
3,727,398	-		PFR28_03219	0.55	-0.3
3,727,448	+		PFR28_03219	0.62	+0.8
3,727,449	-		PFR28_03219	0.62	-0.1
3,727,449	-		PFR28_03219	0.62	+0.0
3,727,449	-		PFR28_03219	0.62	-0.8
3,727,449	-		PFR28_03219	0.62	+0.5
3,727,449	-		PFR28_03219	0.62	+0.9
3,727,481	+		PFR28_03219	0.67	-0.0
3,727,481	+		PFR28_03219	0.67	-1.0
3,727,481	+		PFR28_03219	0.67	-1.4
3,727,481	+		PFR28_03219	0.67	+0.5
3,727,481	+		PFR28_03219	0.67	+0.6
3,727,481	+		PFR28_03219	0.67	-0.7
3,727,481	+		PFR28_03219	0.67	+0.6
3,727,481	+		PFR28_03219	0.67	+0.5
3,727,481	+		PFR28_03219	0.67	-1.7
3,727,482	-		PFR28_03219	0.67	+0.4
3,727,482	-		PFR28_03219	0.67	+0.7
3,727,482	-		PFR28_03219	0.67	+1.0
3,727,482	-		PFR28_03219	0.67	-0.5
3,727,482	-		PFR28_03219	0.67	-1.5
3,727,482	-		PFR28_03219	0.67	+0.0
3,727,482	-		PFR28_03219	0.67	-0.9
3,727,591	-		PFR28_03219	0.82	+0.4
3,727,616	+		PFR28_03219	0.86	-0.8
3,727,616	+		PFR28_03219	0.86	+1.2
3,727,616	+		PFR28_03219	0.86	+0.0
3,727,617	-		PFR28_03219	0.86	+0.5
3,727,626	+		PFR28_03219	0.87	+0.3
3,727,626	+		PFR28_03219	0.87	-0.1
3,727,661	+				+1.3
3,727,661	+				+1.6
3,727,661	+				+0.0
3,727,661	+				-0.6
3,727,662	-				+0.3
3,727,662	-				+1.2
3,727,662	-				+0.2
3,727,662	-				-1.1
3,727,662	-				+0.2
3,727,880	+				-0.3
3,727,881	-				+0.9
3,727,938	+				-0.2
3,727,986	+				+1.4
3,727,986	+				-1.3
3,727,986	+				+0.6
3,727,987	-				-0.2
3,727,987	-				-1.1
3,727,987	-				-0.4
3,728,009	-				+0.8
3,728,009	-				+0.7
3,728,009	-				+1.8
3,728,009	-				+0.4
3,728,011	-				+1.4
3,728,078	+				+1.7
3,728,078	+				+1.3
3,728,078	+				+0.8
3,728,079	-				+0.7
3,728,196	+		PFR28_03220	0.67	+1.1
3,728,196	+		PFR28_03220	0.67	-0.9
3,728,196	+		PFR28_03220	0.67	-2.7
3,728,197	-		PFR28_03220	0.68	-1.7
3,728,197	-		PFR28_03220	0.68	+0.6
3,728,197	-		PFR28_03220	0.68	+0.7
3,728,197	-		PFR28_03220	0.68	-0.3
3,728,197	-		PFR28_03220	0.68	+0.3
3,728,197	-		PFR28_03220	0.68	-0.5
3,728,197	-		PFR28_03220	0.68	-0.2
3,728,200	+		PFR28_03220	0.69	-1.8
3,728,200	+		PFR28_03220	0.69	+1.1
3,728,200	+		PFR28_03220	0.69	-0.5
3,728,200	+		PFR28_03220	0.69	+0.5
3,728,200	+		PFR28_03220	0.69	-2.2
3,728,200	+		PFR28_03220	0.69	+0.5
3,728,200	+		PFR28_03220	0.69	-0.6
3,728,200	+		PFR28_03220	0.69	-0.3
3,728,200	+		PFR28_03220	0.69	-0.1
3,728,200	+		PFR28_03220	0.69	+1.1
3,728,200	+		PFR28_03220	0.69	-0.5
3,728,200	+		PFR28_03220	0.69	-0.0
3,728,201	-		PFR28_03220	0.70	+0.8
3,728,201	-		PFR28_03220	0.70	+0.4
3,728,201	-		PFR28_03220	0.70	+2.0
3,728,201	-		PFR28_03220	0.70	-0.4
3,728,201	-		PFR28_03220	0.70	+0.8
3,728,201	-		PFR28_03220	0.70	+0.3
3,728,201	-		PFR28_03220	0.70	+0.3
3,728,201	-		PFR28_03220	0.70	+0.4
3,728,201	-		PFR28_03220	0.70	-0.5
3,728,201	-		PFR28_03220	0.70	+0.2
3,728,201	-		PFR28_03220	0.70	+0.1
3,728,201	-		PFR28_03220	0.70	+0.3
3,728,201	-		PFR28_03220	0.70	+0.0
3,728,201	-		PFR28_03220	0.70	-0.2
3,728,201	-		PFR28_03220	0.70	+1.6
3,728,201	-		PFR28_03220	0.70	+0.2
3,728,336	+				-1.8
3,728,337	-				+0.9
3,728,427	-				+0.7
3,728,484	+		PFR28_03221	0.16	-1.1
3,728,484	+		PFR28_03221	0.16	+2.1
3,728,484	+		PFR28_03221	0.16	-0.7
3,728,485	-		PFR28_03221	0.16	-0.1
3,728,485	-		PFR28_03221	0.16	-0.1
3,728,485	-		PFR28_03221	0.16	-0.7
3,728,485	-		PFR28_03221	0.16	-1.2
3,728,589	+		PFR28_03221	0.35	-1.3
3,728,589	+		PFR28_03221	0.35	-0.5
3,728,613	+		PFR28_03221	0.40	+0.9
3,728,613	+		PFR28_03221	0.40	-0.7
3,728,613	+		PFR28_03221	0.40	-1.1
3,728,614	-		PFR28_03221	0.40	-1.5
3,728,614	-		PFR28_03221	0.40	+0.2
3,728,614	-		PFR28_03221	0.40	-1.3
3,728,614	-		PFR28_03221	0.40	+2.3
3,728,645	+		PFR28_03221	0.46	-0.1
3,728,645	+		PFR28_03221	0.46	-1.3
3,728,645	+		PFR28_03221	0.46	-0.9
3,728,645	+		PFR28_03221	0.46	-0.3
3,728,645	+		PFR28_03221	0.46	+0.5
3,728,646	-		PFR28_03221	0.46	-0.5
3,728,646	-		PFR28_03221	0.46	+0.5
3,728,646	-		PFR28_03221	0.46	+0.9
3,728,646	-		PFR28_03221	0.46	-0.7
3,728,646	-		PFR28_03221	0.46	+0.8
3,728,648	+		PFR28_03221	0.46	+0.9
3,728,648	+		PFR28_03221	0.46	-0.4
3,728,649	-		PFR28_03221	0.46	-2.0
3,728,649	-		PFR28_03221	0.46	-0.4
3,728,944	+				-0.8
3,728,944	+				+1.3
3,728,944	+				+0.2
3,728,945	-				-1.8
3,728,945	-				+0.3
3,728,952	+				-1.4
3,728,952	+				-0.8
3,728,952	+				-0.3
3,728,953	-				+0.3
3,728,953	-				+0.8
3,729,030	+				+0.6
3,729,030	+				-0.3
3,729,030	+				-0.0
3,729,030	+				-0.2
3,729,031	-				+1.0