Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF973

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF971 and GFF972 are separated by 10 nucleotidesGFF972 and GFF973 are separated by 488 nucleotidesGFF973 and GFF974 are separated by 251 nucleotides GFF971 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 157,293 to 158,918 GFF971 GFF972 - FIG01045803: hypothetical protein, at 158,929 to 159,186 GFF972 GFF973 - FIG074102: hypothetical protein, at 159,675 to 160,283 GFF973 GFF974 - FIG01045697: hypothetical protein, at 160,535 to 161,530 GFF974 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1at 158.912 kb on + strandat 158.973 kb on + strand, within GFF972at 158.973 kb on + strand, within GFF972at 159.079 kb on - strand, within GFF972at 159.080 kb on + strand, within GFF972at 159.154 kb on + strand, within GFF972at 159.155 kb on - strand, within GFF972at 159.159 kb on + strand, within GFF972at 159.159 kb on + strand, within GFF972at 159.160 kb on - strand, within GFF972at 159.160 kb on - strand, within GFF972at 159.211 kb on + strandat 159.217 kb on - strandat 159.355 kb on + strandat 159.455 kb on + strandat 159.455 kb on + strandat 159.468 kb on + strandat 159.495 kb on + strandat 159.496 kb on - strandat 159.611 kb on + strandat 159.745 kb on + strand, within GFF973at 160.058 kb on + strand, within GFF973at 160.248 kb on + strandat 160.308 kb on - strandat 160.353 kb on - strandat 160.505 kb on + strandat 160.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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158,912 + -2.4
158,973 + GFF972 0.17 -0.4
158,973 + GFF972 0.17 -0.6
159,079 - GFF972 0.58 +0.0
159,080 + GFF972 0.59 -0.4
159,154 + GFF972 0.87 -0.1
159,155 - GFF972 0.88 -0.1
159,159 + GFF972 0.89 -1.8
159,159 + GFF972 0.89 -0.3
159,160 - GFF972 0.90 +0.2
159,160 - GFF972 0.90 -0.0
159,211 + -0.7
159,217 - -0.8
159,355 + -0.6
159,455 + -0.7
159,455 + -0.3
159,468 + -0.9
159,495 + -0.8
159,496 - +0.8
159,611 + -0.5
159,745 + GFF973 0.11 -1.1
160,058 + GFF973 0.63 -0.3
160,248 + +0.2
160,308 - +0.3
160,353 - +0.5
160,505 + -0.4
160,545 - -0.1

Or see this region's nucleotide sequence