Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF925

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF924 and GFF925 overlap by 6 nucleotidesGFF925 and GFF926 are separated by 224 nucleotides GFF924 - Trehalose operon transcriptional repressor, at 101,709 to 102,656 GFF924 GFF925 - hypothetical protein, at 102,651 to 102,767 GFF925 GFF926 - Mg(2+) transport ATPase, P-type (EC 3.6.3.2), at 102,992 to 105,748 GFF926 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 101.689 kb on + strandat 101.689 kb on + strandat 101.698 kb on + strandat 101.702 kb on + strandat 101.702 kb on + strandat 101.892 kb on - strand, within GFF924at 101.908 kb on + strand, within GFF924at 101.908 kb on + strand, within GFF924at 101.992 kb on + strand, within GFF924at 102.064 kb on + strand, within GFF924at 102.065 kb on - strand, within GFF924at 102.123 kb on - strand, within GFF924at 102.165 kb on - strand, within GFF924at 102.337 kb on - strand, within GFF924at 102.368 kb on + strand, within GFF924at 102.369 kb on - strand, within GFF924at 102.372 kb on - strand, within GFF924at 102.380 kb on - strand, within GFF924at 102.380 kb on - strand, within GFF924at 102.458 kb on + strand, within GFF924at 102.750 kb on - strand, within GFF925at 102.764 kb on - strandat 103.035 kb on + strandat 103.040 kb on - strandat 103.040 kb on - strandat 103.243 kb on - strandat 103.336 kb on - strand, within GFF926at 103.603 kb on + strand, within GFF926at 103.606 kb on + strand, within GFF926

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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101,689 + -0.2
101,689 + +0.1
101,698 + -0.2
101,702 + -0.4
101,702 + -0.4
101,892 - GFF924 0.19 +0.2
101,908 + GFF924 0.21 +0.4
101,908 + GFF924 0.21 +0.1
101,992 + GFF924 0.30 -0.1
102,064 + GFF924 0.37 -0.1
102,065 - GFF924 0.38 +0.5
102,123 - GFF924 0.44 -0.2
102,165 - GFF924 0.48 -1.8
102,337 - GFF924 0.66 +0.6
102,368 + GFF924 0.70 -0.4
102,369 - GFF924 0.70 +0.3
102,372 - GFF924 0.70 -0.3
102,380 - GFF924 0.71 -0.5
102,380 - GFF924 0.71 +3.1
102,458 + GFF924 0.79 +0.6
102,750 - GFF925 0.85 -1.2
102,764 - -1.3
103,035 + +0.9
103,040 - -0.5
103,040 - -0.2
103,243 - -0.0
103,336 - GFF926 0.12 -0.2
103,603 + GFF926 0.22 +0.6
103,606 + GFF926 0.22 +0.1

Or see this region's nucleotide sequence