Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF748

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF747 and GFF748 are separated by 53 nucleotidesGFF748 and GFF749 overlap by 4 nucleotides GFF747 - Multidrug translocase MdfA, at 105,559 to 106,791 GFF747 GFF748 - Protein ybjI, at 106,845 to 107,660 GFF748 GFF749 - Putative transport protein/putative regulator, at 107,657 to 108,868 GFF749 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1 2at 105.883 kb on - strand, within GFF747at 105.937 kb on + strand, within GFF747at 106.328 kb on - strand, within GFF747at 106.404 kb on + strand, within GFF747at 106.440 kb on + strand, within GFF747at 106.495 kb on + strand, within GFF747at 106.496 kb on - strand, within GFF747at 106.496 kb on - strand, within GFF747at 106.496 kb on - strand, within GFF747at 106.524 kb on - strand, within GFF747at 106.663 kb on - strand, within GFF747at 106.873 kb on - strandat 106.876 kb on - strandat 106.890 kb on - strandat 107.106 kb on + strand, within GFF748at 107.272 kb on + strand, within GFF748at 107.515 kb on + strand, within GFF748at 107.573 kb on - strand, within GFF748at 107.599 kb on + strandat 107.776 kb on - strandat 107.776 kb on - strandat 107.790 kb on + strand, within GFF749at 108.037 kb on - strand, within GFF749at 108.141 kb on - strand, within GFF749at 108.430 kb on - strand, within GFF749at 108.587 kb on - strand, within GFF749at 108.605 kb on + strand, within GFF749

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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105,883 - GFF747 0.26 -0.4
105,937 + GFF747 0.31 -0.5
106,328 - GFF747 0.62 -0.6
106,404 + GFF747 0.69 +0.4
106,440 + GFF747 0.71 -1.8
106,495 + GFF747 0.76 -0.1
106,496 - GFF747 0.76 -0.0
106,496 - GFF747 0.76 -2.1
106,496 - GFF747 0.76 +0.2
106,524 - GFF747 0.78 -0.3
106,663 - GFF747 0.90 +0.2
106,873 - -0.1
106,876 - +0.7
106,890 - +0.3
107,106 + GFF748 0.32 -1.1
107,272 + GFF748 0.52 -2.5
107,515 + GFF748 0.82 -0.7
107,573 - GFF748 0.89 -0.2
107,599 + +0.3
107,776 - +0.3
107,776 - -0.5
107,790 + GFF749 0.11 -1.4
108,037 - GFF749 0.31 +2.4
108,141 - GFF749 0.40 +0.2
108,430 - GFF749 0.64 +0.2
108,587 - GFF749 0.77 +1.7
108,605 + GFF749 0.78 +0.8

Or see this region's nucleotide sequence