Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF707

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF706 and GFF707 are separated by 476 nucleotidesGFF707 and GFF708 are separated by 115 nucleotidesGFF708 and GFF709 are separated by 28 nucleotides GFF706 - Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2), at 63,328 to 64,074 GFF706 GFF707 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 64,551 to 65,054 GFF707 GFF708 - FIG01046955: hypothetical protein, at 65,170 to 65,328 GFF708 GFF709 - Putative DMT superfamily metabolite efflux protein precursor, at 65,357 to 66,244 GFF709 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 63.571 kb on + strand, within GFF706at 63.581 kb on + strand, within GFF706at 63.708 kb on + strand, within GFF706at 63.796 kb on - strand, within GFF706at 63.801 kb on + strand, within GFF706at 63.826 kb on - strand, within GFF706at 63.907 kb on - strand, within GFF706at 64.039 kb on - strandat 64.060 kb on + strandat 64.121 kb on - strandat 64.121 kb on - strandat 64.195 kb on - strandat 64.259 kb on + strandat 64.260 kb on - strandat 64.365 kb on + strandat 64.428 kb on + strandat 64.429 kb on - strandat 64.429 kb on - strandat 64.429 kb on - strandat 64.429 kb on - strandat 64.430 kb on + strandat 64.430 kb on + strandat 64.431 kb on - strandat 64.433 kb on - strandat 64.440 kb on + strandat 64.440 kb on + strandat 64.440 kb on + strandat 64.531 kb on + strandat 64.540 kb on + strandat 64.541 kb on - strandat 64.547 kb on - strandat 64.718 kb on + strand, within GFF707at 64.718 kb on + strand, within GFF707at 64.878 kb on - strand, within GFF707at 65.035 kb on - strandat 65.062 kb on + strandat 65.408 kb on - strandat 65.578 kb on - strand, within GFF709at 65.757 kb on + strand, within GFF709at 65.821 kb on + strand, within GFF709at 65.821 kb on + strand, within GFF709at 65.822 kb on - strand, within GFF709at 65.822 kb on - strand, within GFF709at 65.822 kb on - strand, within GFF709at 65.822 kb on - strand, within GFF709at 65.822 kb on - strand, within GFF709at 65.878 kb on + strand, within GFF709at 65.979 kb on + strand, within GFF709at 65.980 kb on - strand, within GFF709at 65.984 kb on + strand, within GFF709at 65.984 kb on + strand, within GFF709at 65.984 kb on + strand, within GFF709at 65.985 kb on - strand, within GFF709at 65.988 kb on + strand, within GFF709at 66.015 kb on + strand, within GFF709at 66.015 kb on + strand, within GFF709at 66.015 kb on + strand, within GFF709at 66.016 kb on - strand, within GFF709

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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63,571 + GFF706 0.33 +0.3
63,581 + GFF706 0.34 +0.6
63,708 + GFF706 0.51 -0.4
63,796 - GFF706 0.63 +1.0
63,801 + GFF706 0.63 -2.4
63,826 - GFF706 0.67 +0.0
63,907 - GFF706 0.78 -0.7
64,039 - +0.2
64,060 + +0.1
64,121 - -0.6
64,121 - -0.7
64,195 - +0.1
64,259 + -0.9
64,260 - -1.1
64,365 + +0.4
64,428 + +0.5
64,429 - -0.1
64,429 - +0.8
64,429 - +0.3
64,429 - +0.5
64,430 + +0.6
64,430 + -0.0
64,431 - +0.2
64,433 - +0.1
64,440 + +0.3
64,440 + -0.5
64,440 + +0.3
64,531 + +1.9
64,540 + -0.2
64,541 - +0.1
64,547 - +0.5
64,718 + GFF707 0.33 -0.2
64,718 + GFF707 0.33 -1.0
64,878 - GFF707 0.65 -0.7
65,035 - -0.4
65,062 + +0.0
65,408 - -0.3
65,578 - GFF709 0.25 +0.1
65,757 + GFF709 0.45 +0.7
65,821 + GFF709 0.52 -0.2
65,821 + GFF709 0.52 -0.1
65,822 - GFF709 0.52 -1.1
65,822 - GFF709 0.52 +0.0
65,822 - GFF709 0.52 +0.2
65,822 - GFF709 0.52 -0.3
65,822 - GFF709 0.52 -0.3
65,878 + GFF709 0.59 -0.4
65,979 + GFF709 0.70 +0.0
65,980 - GFF709 0.70 +2.3
65,984 + GFF709 0.71 -0.3
65,984 + GFF709 0.71 -0.1
65,984 + GFF709 0.71 -0.1
65,985 - GFF709 0.71 -0.4
65,988 + GFF709 0.71 -0.2
66,015 + GFF709 0.74 +0.2
66,015 + GFF709 0.74 +0.0
66,015 + GFF709 0.74 -0.1
66,016 - GFF709 0.74 +0.6

Or see this region's nucleotide sequence