Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF597

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF596 and GFF597 are separated by 108 nucleotidesGFF597 and GFF598 are separated by 2 nucleotidesGFF598 and GFF599 are separated by 87 nucleotides GFF596 - 'RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)' transl_table=11, at 331,720 to 332,739 GFF596 GFF597 - DNA-damage-inducible protein J, at 332,848 to 333,108 GFF597 GFF598 - YafQ toxin protein, at 333,111 to 333,386 GFF598 GFF599 - Transcriptional activator of maltose regulon, MalT, at 333,474 to 336,179 GFF599 Position (kb) 332 333 334Strain fitness (log2 ratio) -1 0 1at 331.982 kb on - strand, within GFF596at 332.656 kb on - strandat 332.737 kb on + strandat 332.748 kb on + strandat 332.786 kb on - strandat 332.819 kb on + strandat 332.832 kb on + strandat 333.017 kb on + strand, within GFF597at 333.018 kb on - strand, within GFF597at 333.039 kb on + strand, within GFF597at 333.179 kb on + strand, within GFF598at 333.180 kb on - strand, within GFF598at 333.180 kb on - strand, within GFF598at 333.207 kb on - strand, within GFF598at 333.251 kb on + strand, within GFF598at 333.252 kb on - strand, within GFF598at 333.320 kb on + strand, within GFF598at 333.321 kb on - strand, within GFF598at 333.326 kb on + strand, within GFF598at 333.384 kb on + strandat 333.406 kb on - strandat 333.578 kb on + strandat 333.755 kb on + strand, within GFF599at 333.915 kb on + strand, within GFF599at 333.982 kb on - strand, within GFF599

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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331,982 - GFF596 0.26 -0.2
332,656 - -1.6
332,737 + +0.4
332,748 + +0.3
332,786 - +0.0
332,819 + -0.1
332,832 + -0.1
333,017 + GFF597 0.65 -0.6
333,018 - GFF597 0.65 -0.8
333,039 + GFF597 0.73 -1.0
333,179 + GFF598 0.25 -0.0
333,180 - GFF598 0.25 -0.5
333,180 - GFF598 0.25 -0.4
333,207 - GFF598 0.35 +0.4
333,251 + GFF598 0.51 -0.2
333,252 - GFF598 0.51 -0.2
333,320 + GFF598 0.76 +0.4
333,321 - GFF598 0.76 -0.4
333,326 + GFF598 0.78 -0.4
333,384 + -0.3
333,406 - -0.0
333,578 + -0.6
333,755 + GFF599 0.10 -1.0
333,915 + GFF599 0.16 +0.7
333,982 - GFF599 0.19 -0.1

Or see this region's nucleotide sequence