Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF518

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF517 and GFF518 are separated by 6 nucleotidesGFF518 and GFF519 are separated by 91 nucleotides GFF517 - Oligopeptidase A (EC 3.4.24.70), at 247,096 to 249,138 GFF517 GFF518 - rRNA small subunit methyltransferase J, at 249,145 to 249,903 GFF518 GFF519 - Di/tripeptide permease DtpB, at 249,995 to 251,413 GFF519 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1at 248.153 kb on + strand, within GFF517at 248.162 kb on - strand, within GFF517at 248.238 kb on + strand, within GFF517at 248.295 kb on + strand, within GFF517at 248.329 kb on + strand, within GFF517at 248.659 kb on + strand, within GFF517at 248.720 kb on - strand, within GFF517at 248.736 kb on + strand, within GFF517at 248.737 kb on - strand, within GFF517at 248.935 kb on + strandat 248.936 kb on - strandat 249.192 kb on - strandat 249.649 kb on + strand, within GFF518at 249.874 kb on - strandat 249.922 kb on + strandat 249.951 kb on - strandat 249.997 kb on - strandat 250.222 kb on + strand, within GFF519at 250.280 kb on - strand, within GFF519at 250.312 kb on - strand, within GFF519at 250.418 kb on - strand, within GFF519at 250.418 kb on - strand, within GFF519at 250.432 kb on + strand, within GFF519at 250.570 kb on + strand, within GFF519at 250.597 kb on + strand, within GFF519at 250.726 kb on + strand, within GFF519at 250.727 kb on - strand, within GFF519at 250.815 kb on - strand, within GFF519

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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248,153 + GFF517 0.52 -0.1
248,162 - GFF517 0.52 -0.6
248,238 + GFF517 0.56 +0.4
248,295 + GFF517 0.59 -1.1
248,329 + GFF517 0.60 -0.2
248,659 + GFF517 0.77 -0.9
248,720 - GFF517 0.79 -0.5
248,736 + GFF517 0.80 -0.3
248,737 - GFF517 0.80 -0.3
248,935 + -0.9
248,936 - -0.6
249,192 - +0.6
249,649 + GFF518 0.66 -0.9
249,874 - -1.6
249,922 + -0.3
249,951 - -0.1
249,997 - -0.1
250,222 + GFF519 0.16 -0.2
250,280 - GFF519 0.20 -2.1
250,312 - GFF519 0.22 -0.2
250,418 - GFF519 0.30 -0.2
250,418 - GFF519 0.30 -0.2
250,432 + GFF519 0.31 +1.3
250,570 + GFF519 0.41 -1.2
250,597 + GFF519 0.42 +0.2
250,726 + GFF519 0.52 +0.3
250,727 - GFF519 0.52 +0.1
250,815 - GFF519 0.58 -0.1

Or see this region's nucleotide sequence