Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4387

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4385 and GFF4386 are separated by 68 nucleotidesGFF4386 and GFF4387 are separated by 152 nucleotidesGFF4387 and GFF4388 are separated by 113 nucleotides GFF4385 - Primosomal replication protein N prime prime, at 169,330 to 169,857 GFF4385 GFF4386 - FIG039061: hypothetical protein related to heme utilization, at 169,926 to 170,303 GFF4386 GFF4387 - Adenine phosphoribosyltransferase (EC 2.4.2.7), at 170,456 to 171,007 GFF4387 GFF4388 - DNA polymerase III subunits gamma and tau (EC 2.7.7.7), at 171,121 to 173,049 GFF4388 Position (kb) 170 171 172Strain fitness (log2 ratio) -1 0 1at 169.837 kb on + strandat 169.838 kb on - strandat 169.892 kb on + strandat 169.935 kb on - strandat 169.937 kb on + strandat 169.937 kb on + strandat 169.969 kb on + strand, within GFF4386at 170.078 kb on - strand, within GFF4386at 170.168 kb on - strand, within GFF4386at 170.184 kb on - strand, within GFF4386at 170.437 kb on - strandat 170.437 kb on - strandat 170.449 kb on + strandat 170.449 kb on + strandat 170.449 kb on + strandat 170.449 kb on + strandat 170.450 kb on - strandat 170.450 kb on - strandat 170.727 kb on + strand, within GFF4387at 170.754 kb on - strand, within GFF4387

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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169,837 + +0.7
169,838 - -0.2
169,892 + +0.3
169,935 - -1.1
169,937 + +1.0
169,937 + +0.3
169,969 + GFF4386 0.11 -0.7
170,078 - GFF4386 0.40 -0.1
170,168 - GFF4386 0.64 -1.3
170,184 - GFF4386 0.68 +0.1
170,437 - +0.7
170,437 - +0.0
170,449 + +0.3
170,449 + -0.4
170,449 + -0.2
170,449 + -0.3
170,450 - -0.6
170,450 - -0.3
170,727 + GFF4387 0.49 -0.8
170,754 - GFF4387 0.54 -1.2

Or see this region's nucleotide sequence