Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4178

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4177 and GFF4178 are separated by 57 nucleotidesGFF4178 and GFF4179 overlap by 40 nucleotides GFF4177 - Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43), at 66,032 to 67,153 GFF4177 GFF4178 - FIG074102: hypothetical protein, at 67,211 to 68,119 GFF4178 GFF4179 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 68,080 to 69,240 GFF4179 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1at 66.278 kb on + strand, within GFF4177at 66.539 kb on - strand, within GFF4177at 66.938 kb on + strand, within GFF4177at 66.939 kb on - strand, within GFF4177at 66.939 kb on - strand, within GFF4177at 66.949 kb on + strand, within GFF4177at 66.950 kb on - strand, within GFF4177at 66.952 kb on + strand, within GFF4177at 66.992 kb on + strand, within GFF4177at 66.992 kb on + strand, within GFF4177at 66.992 kb on + strand, within GFF4177at 67.165 kb on - strandat 67.167 kb on - strandat 67.167 kb on - strandat 67.170 kb on - strandat 67.216 kb on + strandat 67.230 kb on + strandat 67.292 kb on + strandat 67.351 kb on + strand, within GFF4178at 67.352 kb on - strand, within GFF4178at 67.432 kb on + strand, within GFF4178at 67.432 kb on + strand, within GFF4178at 67.447 kb on + strand, within GFF4178at 67.458 kb on + strand, within GFF4178at 67.492 kb on + strand, within GFF4178at 67.574 kb on + strand, within GFF4178at 67.575 kb on - strand, within GFF4178at 67.686 kb on - strand, within GFF4178at 67.686 kb on - strand, within GFF4178at 67.686 kb on - strand, within GFF4178at 67.687 kb on + strand, within GFF4178at 67.713 kb on + strand, within GFF4178at 67.715 kb on + strand, within GFF4178at 67.715 kb on + strand, within GFF4178at 67.716 kb on - strand, within GFF4178at 67.716 kb on - strand, within GFF4178at 67.826 kb on + strand, within GFF4178at 67.960 kb on + strand, within GFF4178at 67.969 kb on + strand, within GFF4178at 67.969 kb on + strand, within GFF4178at 68.179 kb on + strandat 68.213 kb on + strand, within GFF4179at 68.413 kb on - strand, within GFF4179at 68.541 kb on + strand, within GFF4179at 68.551 kb on - strand, within GFF4179at 68.552 kb on + strand, within GFF4179at 68.621 kb on + strand, within GFF4179at 68.621 kb on + strand, within GFF4179at 68.725 kb on + strand, within GFF4179at 68.784 kb on - strand, within GFF4179at 68.847 kb on + strand, within GFF4179at 68.925 kb on + strand, within GFF4179at 68.926 kb on - strand, within GFF4179at 68.926 kb on - strand, within GFF4179at 69.026 kb on + strand, within GFF4179at 69.026 kb on + strand, within GFF4179at 69.027 kb on - strand, within GFF4179

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
remove
66,278 + GFF4177 0.22 +0.9
66,539 - GFF4177 0.45 -0.0
66,938 + GFF4177 0.81 -1.7
66,939 - GFF4177 0.81 +0.4
66,939 - GFF4177 0.81 +1.2
66,949 + GFF4177 0.82 +0.3
66,950 - GFF4177 0.82 -0.3
66,952 + GFF4177 0.82 -0.2
66,992 + GFF4177 0.86 -0.8
66,992 + GFF4177 0.86 +0.2
66,992 + GFF4177 0.86 +0.0
67,165 - +0.4
67,167 - +0.1
67,167 - +1.6
67,170 - -0.7
67,216 + +0.1
67,230 + +0.8
67,292 + -0.3
67,351 + GFF4178 0.15 +0.5
67,352 - GFF4178 0.16 -0.4
67,432 + GFF4178 0.24 +0.4
67,432 + GFF4178 0.24 +0.5
67,447 + GFF4178 0.26 -0.2
67,458 + GFF4178 0.27 +0.9
67,492 + GFF4178 0.31 -0.2
67,574 + GFF4178 0.40 -0.7
67,575 - GFF4178 0.40 +0.7
67,686 - GFF4178 0.52 -0.0
67,686 - GFF4178 0.52 +0.3
67,686 - GFF4178 0.52 +0.1
67,687 + GFF4178 0.52 +0.2
67,713 + GFF4178 0.55 +1.1
67,715 + GFF4178 0.55 -0.2
67,715 + GFF4178 0.55 -0.7
67,716 - GFF4178 0.56 +0.2
67,716 - GFF4178 0.56 +0.2
67,826 + GFF4178 0.68 -0.8
67,960 + GFF4178 0.82 +0.5
67,969 + GFF4178 0.83 +0.6
67,969 + GFF4178 0.83 +0.1
68,179 + +0.0
68,213 + GFF4179 0.11 +0.5
68,413 - GFF4179 0.29 -0.2
68,541 + GFF4179 0.40 -0.0
68,551 - GFF4179 0.41 +0.1
68,552 + GFF4179 0.41 -0.4
68,621 + GFF4179 0.47 -0.1
68,621 + GFF4179 0.47 -0.0
68,725 + GFF4179 0.56 +0.4
68,784 - GFF4179 0.61 +0.8
68,847 + GFF4179 0.66 +0.1
68,925 + GFF4179 0.73 -0.2
68,926 - GFF4179 0.73 -0.2
68,926 - GFF4179 0.73 +0.2
69,026 + GFF4179 0.81 +1.0
69,026 + GFF4179 0.81 -0.1
69,027 - GFF4179 0.82 -0.3

Or see this region's nucleotide sequence