Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4057

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4056 and GFF4057 are separated by 185 nucleotidesGFF4057 and GFF4058 are separated by 253 nucleotidesGFF4058 and GFF4059 are separated by 19 nucleotides GFF4056 - Uncharacterized protein ImpC, at 19,909 to 21,417 GFF4056 GFF4057 - putative cytoplasmic protein, at 21,603 to 22,049 GFF4057 GFF4058 - Putative cytoplasmic protein USSDB7A, at 22,303 to 22,788 GFF4058 GFF4059 - Type VI secretion lipoprotein/VasD, at 22,808 to 22,963 GFF4059 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1at 20.744 kb on - strand, within GFF4056at 20.996 kb on - strand, within GFF4056at 21.208 kb on + strand, within GFF4056at 21.208 kb on + strand, within GFF4056at 21.246 kb on + strand, within GFF4056at 21.247 kb on - strand, within GFF4056at 21.279 kb on - strandat 21.419 kb on - strandat 21.421 kb on - strandat 21.423 kb on - strandat 21.527 kb on - strandat 21.599 kb on + strandat 21.765 kb on + strand, within GFF4057at 21.765 kb on + strand, within GFF4057at 21.767 kb on + strand, within GFF4057at 21.767 kb on + strand, within GFF4057at 21.768 kb on - strand, within GFF4057at 21.768 kb on - strand, within GFF4057at 21.779 kb on - strand, within GFF4057at 22.043 kb on + strandat 22.483 kb on + strand, within GFF4058at 22.483 kb on + strand, within GFF4058at 22.950 kb on + strandat 22.997 kb on + strandat 23.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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20,744 - GFF4056 0.55 -0.3
20,996 - GFF4056 0.72 +0.7
21,208 + GFF4056 0.86 -2.0
21,208 + GFF4056 0.86 -0.8
21,246 + GFF4056 0.89 -0.4
21,247 - GFF4056 0.89 -0.0
21,279 - -0.3
21,419 - -0.9
21,421 - +0.2
21,423 - -0.6
21,527 - -0.1
21,599 + -0.2
21,765 + GFF4057 0.36 -1.1
21,765 + GFF4057 0.36 -0.5
21,767 + GFF4057 0.37 -0.5
21,767 + GFF4057 0.37 -0.3
21,768 - GFF4057 0.37 -0.5
21,768 - GFF4057 0.37 -0.6
21,779 - GFF4057 0.39 -0.2
22,043 + -0.6
22,483 + GFF4058 0.37 -0.3
22,483 + GFF4058 0.37 +0.0
22,950 + -0.2
22,997 + +0.1
23,044 - -1.2

Or see this region's nucleotide sequence