Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3837

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3835 and GFF3836 overlap by 27 nucleotidesGFF3836 and GFF3837 overlap by 4 nucleotidesGFF3837 and GFF3838 overlap by 4 nucleotides GFF3835 - Uncharacterized HTH-type transcriptional regulator YegW, at 104,627 to 105,373 GFF3835 GFF3836 - Uncharacterized sugar kinase YegV, PfkB family, at 105,347 to 106,312 GFF3836 GFF3837 - ADP-ribosylglycohydrolase YegU (EC 3.2.-.-), at 106,309 to 107,313 GFF3837 GFF3838 - Putative nucleoside transporter YegT, at 107,310 to 108,626 GFF3838 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1at 105.332 kb on + strandat 105.349 kb on - strandat 105.761 kb on - strand, within GFF3836at 106.287 kb on - strandat 106.287 kb on - strandat 106.421 kb on - strand, within GFF3837at 106.681 kb on - strand, within GFF3837at 106.822 kb on - strand, within GFF3837at 107.052 kb on + strand, within GFF3837at 107.053 kb on - strand, within GFF3837at 107.053 kb on - strand, within GFF3837at 107.316 kb on + strandat 107.586 kb on - strand, within GFF3838at 107.684 kb on - strand, within GFF3838at 107.899 kb on + strand, within GFF3838at 107.900 kb on - strand, within GFF3838at 108.000 kb on - strand, within GFF3838at 108.114 kb on - strand, within GFF3838at 108.121 kb on + strand, within GFF3838at 108.121 kb on + strand, within GFF3838at 108.121 kb on + strand, within GFF3838at 108.122 kb on - strand, within GFF3838at 108.122 kb on - strand, within GFF3838at 108.267 kb on - strand, within GFF3838at 108.268 kb on + strand, within GFF3838

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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105,332 + +0.3
105,349 - +0.6
105,761 - GFF3836 0.43 -0.1
106,287 - -0.4
106,287 - +0.1
106,421 - GFF3837 0.11 -1.1
106,681 - GFF3837 0.37 +1.1
106,822 - GFF3837 0.51 -1.5
107,052 + GFF3837 0.74 -0.7
107,053 - GFF3837 0.74 +0.1
107,053 - GFF3837 0.74 -0.2
107,316 + +1.7
107,586 - GFF3838 0.21 +0.4
107,684 - GFF3838 0.28 -0.5
107,899 + GFF3838 0.45 +0.3
107,900 - GFF3838 0.45 -0.4
108,000 - GFF3838 0.52 +1.0
108,114 - GFF3838 0.61 +0.0
108,121 + GFF3838 0.62 +0.1
108,121 + GFF3838 0.62 -2.1
108,121 + GFF3838 0.62 -1.0
108,122 - GFF3838 0.62 +0.3
108,122 - GFF3838 0.62 -0.6
108,267 - GFF3838 0.73 +0.1
108,268 + GFF3838 0.73 +0.3

Or see this region's nucleotide sequence