Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3772

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3771 and GFF3772 overlap by 1 nucleotidesGFF3772 and GFF3773 are separated by 16 nucleotides GFF3771 - Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69), at 37,497 to 38,627 GFF3771 GFF3772 - 1-phosphofructokinase (EC 2.7.1.56), at 38,627 to 39,565 GFF3772 GFF3773 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 39,582 to 41,270 GFF3773 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1at 37.777 kb on - strand, within GFF3771at 37.790 kb on + strand, within GFF3771at 38.173 kb on + strand, within GFF3771at 38.194 kb on + strand, within GFF3771at 38.351 kb on - strand, within GFF3771at 38.666 kb on + strandat 39.118 kb on + strand, within GFF3772at 39.370 kb on - strand, within GFF3772at 39.446 kb on - strand, within GFF3772at 39.549 kb on + strandat 39.598 kb on + strandat 39.630 kb on + strandat 39.631 kb on - strandat 40.177 kb on + strand, within GFF3773at 40.284 kb on + strand, within GFF3773at 40.284 kb on + strand, within GFF3773at 40.285 kb on - strand, within GFF3773at 40.441 kb on - strand, within GFF3773at 40.563 kb on - strand, within GFF3773

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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37,777 - GFF3771 0.25 -1.4
37,790 + GFF3771 0.26 +0.2
38,173 + GFF3771 0.60 -0.2
38,194 + GFF3771 0.62 +0.1
38,351 - GFF3771 0.76 -0.9
38,666 + -0.7
39,118 + GFF3772 0.52 -0.9
39,370 - GFF3772 0.79 +0.1
39,446 - GFF3772 0.87 -1.0
39,549 + +0.5
39,598 + +0.4
39,630 + -0.6
39,631 - -0.1
40,177 + GFF3773 0.35 +0.0
40,284 + GFF3773 0.42 +0.5
40,284 + GFF3773 0.42 -0.2
40,285 - GFF3773 0.42 -1.0
40,441 - GFF3773 0.51 +0.4
40,563 - GFF3773 0.58 -0.1

Or see this region's nucleotide sequence