Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3721 and GFF3722 are separated by 10 nucleotides GFF3722 and GFF3723 are separated by 94 nucleotides GFF3723 and GFF3724 are separated by 187 nucleotides
GFF3721 - Glutathione-regulated potassium-efflux system protein KefB, at 25,926 to 27,731
GFF3721
GFF3722 - Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux, at 27,742 to 27,942
GFF3722
GFF3723 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 28,037 to 28,627
GFF3723
GFF3724 - Protein SlyX, at 28,815 to 29,033
GFF3724
Position (kb) 27
28 Strain fitness (log2 ratio) -1
0
1 at 26.750 kb on + strand, within GFF3721 at 26.763 kb on - strand, within GFF3721 at 26.763 kb on - strand, within GFF3721 at 26.783 kb on - strand, within GFF3721 at 26.788 kb on - strand, within GFF3721 at 26.798 kb on - strand, within GFF3721 at 26.798 kb on - strand, within GFF3721 at 26.798 kb on - strand, within GFF3721 at 26.823 kb on - strand, within GFF3721 at 26.871 kb on + strand, within GFF3721 at 26.871 kb on + strand, within GFF3721 at 26.872 kb on - strand, within GFF3721 at 26.879 kb on - strand, within GFF3721 at 26.995 kb on + strand, within GFF3721 at 26.996 kb on - strand, within GFF3721 at 26.998 kb on + strand, within GFF3721 at 27.056 kb on + strand, within GFF3721 at 27.056 kb on + strand, within GFF3721 at 27.057 kb on - strand, within GFF3721 at 27.122 kb on + strand, within GFF3721 at 27.122 kb on + strand, within GFF3721 at 27.123 kb on - strand, within GFF3721 at 27.179 kb on - strand, within GFF3721 at 27.255 kb on + strand, within GFF3721 at 27.256 kb on - strand, within GFF3721 at 27.257 kb on + strand, within GFF3721 at 27.257 kb on + strand, within GFF3721 at 27.258 kb on - strand, within GFF3721 at 27.264 kb on + strand, within GFF3721 at 27.278 kb on + strand, within GFF3721 at 27.405 kb on - strand, within GFF3721 at 27.445 kb on + strand, within GFF3721 at 27.445 kb on + strand, within GFF3721 at 27.445 kb on + strand, within GFF3721 at 27.446 kb on - strand, within GFF3721 at 27.509 kb on + strand, within GFF3721 at 27.527 kb on - strand, within GFF3721 at 27.527 kb on - strand, within GFF3721 at 27.530 kb on + strand, within GFF3721 at 27.530 kb on + strand, within GFF3721 at 27.531 kb on - strand, within GFF3721 at 27.582 kb on - strand at 27.615 kb on - strand at 27.625 kb on + strand at 27.850 kb on - strand, within GFF3722 at 27.969 kb on - strand at 28.034 kb on - strand at 28.044 kb on + strand at 28.080 kb on + strand at 28.080 kb on + strand at 28.277 kb on - strand, within GFF3723 at 28.437 kb on + strand, within GFF3723 at 28.662 kb on + strand at 28.686 kb on - strand at 28.686 kb on - strand at 28.686 kb on - strand at 28.686 kb on - strand at 28.686 kb on - strand at 28.686 kb on - strand at 28.686 kb on - strand at 28.689 kb on + strand at 28.689 kb on + strand at 28.690 kb on - strand at 28.690 kb on - strand at 28.693 kb on + strand at 28.693 kb on + strand at 28.694 kb on - strand at 28.754 kb on - strand at 28.768 kb on - strand at 28.819 kb on + strand at 28.857 kb on - strand, within GFF3724
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI remove 26,750 + GFF3721 0.46 +0.2 26,763 - GFF3721 0.46 +0.1 26,763 - GFF3721 0.46 -0.1 26,783 - GFF3721 0.47 +1.5 26,788 - GFF3721 0.48 +0.1 26,798 - GFF3721 0.48 +0.2 26,798 - GFF3721 0.48 -0.4 26,798 - GFF3721 0.48 -0.4 26,823 - GFF3721 0.50 -0.4 26,871 + GFF3721 0.52 +0.0 26,871 + GFF3721 0.52 -0.9 26,872 - GFF3721 0.52 -0.7 26,879 - GFF3721 0.53 +0.4 26,995 + GFF3721 0.59 -0.3 26,996 - GFF3721 0.59 +0.5 26,998 + GFF3721 0.59 +0.1 27,056 + GFF3721 0.63 -0.1 27,056 + GFF3721 0.63 -0.7 27,057 - GFF3721 0.63 -0.5 27,122 + GFF3721 0.66 +0.3 27,122 + GFF3721 0.66 +0.1 27,123 - GFF3721 0.66 -0.7 27,179 - GFF3721 0.69 -1.2 27,255 + GFF3721 0.74 +0.6 27,256 - GFF3721 0.74 +0.2 27,257 + GFF3721 0.74 +0.2 27,257 + GFF3721 0.74 +0.1 27,258 - GFF3721 0.74 -0.5 27,264 + GFF3721 0.74 -0.5 27,278 + GFF3721 0.75 -0.5 27,405 - GFF3721 0.82 +0.7 27,445 + GFF3721 0.84 -0.7 27,445 + GFF3721 0.84 +0.5 27,445 + GFF3721 0.84 +0.6 27,446 - GFF3721 0.84 +0.9 27,509 + GFF3721 0.88 +0.6 27,527 - GFF3721 0.89 -1.0 27,527 - GFF3721 0.89 +1.2 27,530 + GFF3721 0.89 -0.0 27,530 + GFF3721 0.89 +0.2 27,531 - GFF3721 0.89 +0.3 27,582 - -0.4 27,615 - -0.8 27,625 + +0.1 27,850 - GFF3722 0.54 -1.0 27,969 - -0.3 28,034 - -0.2 28,044 + +0.1 28,080 + -0.0 28,080 + -0.4 28,277 - GFF3723 0.41 +0.4 28,437 + GFF3723 0.68 -0.2 28,662 + -0.2 28,686 - -0.9 28,686 - -0.2 28,686 - +0.0 28,686 - -0.1 28,686 - -0.9 28,686 - +0.4 28,686 - -0.3 28,689 + +0.5 28,689 + -1.3 28,690 - +0.2 28,690 - -0.1 28,693 + +0.1 28,693 + -0.4 28,694 - +0.2 28,754 - -0.3 28,768 - +0.7 28,819 + -0.9 28,857 - GFF3724 0.19 -0.6
Or see this region's nucleotide sequence