Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3538

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3537 and GFF3538 are separated by 176 nucleotidesGFF3538 and GFF3539 are separated by 46 nucleotides GFF3537 - FIG137360: hypothetical protein, at 288,653 to 289,486 GFF3537 GFF3538 - hypothetical protein, at 289,663 to 289,776 GFF3538 GFF3539 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 289,823 to 292,201 GFF3539 Position (kb) 289 290Strain fitness (log2 ratio) -1 0 1at 288.671 kb on - strandat 288.881 kb on - strand, within GFF3537at 288.887 kb on + strand, within GFF3537at 288.919 kb on + strand, within GFF3537at 288.950 kb on - strand, within GFF3537at 289.110 kb on + strand, within GFF3537at 289.454 kb on - strandat 289.756 kb on + strand, within GFF3538at 289.770 kb on + strandat 289.778 kb on + strandat 290.054 kb on - strandat 290.267 kb on - strand, within GFF3539at 290.363 kb on + strand, within GFF3539at 290.546 kb on + strand, within GFF3539at 290.547 kb on - strand, within GFF3539at 290.759 kb on + strand, within GFF3539at 290.760 kb on - strand, within GFF3539

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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288,671 - +1.1
288,881 - GFF3537 0.27 +0.0
288,887 + GFF3537 0.28 -0.0
288,919 + GFF3537 0.32 +0.0
288,950 - GFF3537 0.36 -0.7
289,110 + GFF3537 0.55 +0.3
289,454 - -0.8
289,756 + GFF3538 0.82 -0.6
289,770 + +1.4
289,778 + -0.0
290,054 - +1.2
290,267 - GFF3539 0.19 -0.4
290,363 + GFF3539 0.23 +1.1
290,546 + GFF3539 0.30 -0.3
290,547 - GFF3539 0.30 +0.1
290,759 + GFF3539 0.39 +0.1
290,760 - GFF3539 0.39 -0.8

Or see this region's nucleotide sequence