Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3484

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3483 and GFF3484 are separated by 173 nucleotidesGFF3484 and GFF3485 are separated by 117 nucleotides GFF3483 - Signal peptide peptidase SppA (EC 3.4.21.-), at 234,963 to 236,819 GFF3483 GFF3484 - FIG002003: Protein YdjA, at 236,993 to 237,544 GFF3484 GFF3485 - Selenide,water dikinase (EC 2.7.9.3), at 237,662 to 238,705 GFF3485 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2at 235.996 kb on + strand, within GFF3483at 236.040 kb on - strand, within GFF3483at 236.104 kb on + strand, within GFF3483at 236.258 kb on - strand, within GFF3483at 236.341 kb on + strand, within GFF3483at 236.421 kb on - strand, within GFF3483at 236.422 kb on + strand, within GFF3483at 236.423 kb on - strand, within GFF3483at 236.484 kb on - strand, within GFF3483at 236.487 kb on - strand, within GFF3483at 236.634 kb on - strandat 236.821 kb on + strandat 236.821 kb on + strandat 236.822 kb on - strandat 236.851 kb on - strandat 236.873 kb on - strandat 236.967 kb on + strandat 237.070 kb on - strand, within GFF3484at 237.262 kb on + strand, within GFF3484at 237.602 kb on + strandat 237.603 kb on - strandat 237.603 kb on - strandat 237.634 kb on - strandat 237.746 kb on - strandat 237.995 kb on - strand, within GFF3485at 238.084 kb on + strand, within GFF3485at 238.085 kb on - strand, within GFF3485at 238.129 kb on - strand, within GFF3485at 238.334 kb on - strand, within GFF3485at 238.451 kb on + strand, within GFF3485at 238.451 kb on + strand, within GFF3485at 238.452 kb on - strand, within GFF3485at 238.452 kb on - strand, within GFF3485at 238.454 kb on - strand, within GFF3485at 238.502 kb on + strand, within GFF3485

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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235,996 + GFF3483 0.56 -0.3
236,040 - GFF3483 0.58 +0.9
236,104 + GFF3483 0.61 +2.1
236,258 - GFF3483 0.70 -0.8
236,341 + GFF3483 0.74 +1.7
236,421 - GFF3483 0.79 +0.1
236,422 + GFF3483 0.79 +0.7
236,423 - GFF3483 0.79 -1.8
236,484 - GFF3483 0.82 +0.1
236,487 - GFF3483 0.82 +0.5
236,634 - -0.4
236,821 + -0.2
236,821 + +0.3
236,822 - -0.1
236,851 - -1.9
236,873 - +0.5
236,967 + -0.8
237,070 - GFF3484 0.14 -0.1
237,262 + GFF3484 0.49 -1.0
237,602 + +0.5
237,603 - +2.1
237,603 - -0.1
237,634 - +0.2
237,746 - +0.5
237,995 - GFF3485 0.32 +1.9
238,084 + GFF3485 0.40 +0.7
238,085 - GFF3485 0.41 -0.0
238,129 - GFF3485 0.45 +0.7
238,334 - GFF3485 0.64 -0.1
238,451 + GFF3485 0.76 +0.2
238,451 + GFF3485 0.76 -1.1
238,452 - GFF3485 0.76 -1.3
238,452 - GFF3485 0.76 +0.2
238,454 - GFF3485 0.76 -0.8
238,502 + GFF3485 0.80 +0.2

Or see this region's nucleotide sequence