Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3044

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3043 and GFF3044 are separated by 27 nucleotidesGFF3044 and GFF3045 are separated by 339 nucleotides GFF3043 - S-adenosylmethionine synthetase (EC 2.5.1.6), at 56,827 to 57,981 GFF3043 GFF3044 - hypothetical protein, at 58,009 to 58,134 GFF3044 GFF3045 - Arabinose-proton symporter, at 58,474 to 59,868 GFF3045 Position (kb) 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.026 kb on + strand, within GFF3044at 58.027 kb on - strand, within GFF3044at 58.030 kb on + strand, within GFF3044at 58.031 kb on - strand, within GFF3044at 58.031 kb on - strand, within GFF3044at 58.058 kb on - strand, within GFF3044at 58.172 kb on - strandat 58.436 kb on + strandat 58.800 kb on + strand, within GFF3045at 58.858 kb on + strand, within GFF3045at 58.896 kb on + strand, within GFF3045at 58.945 kb on + strand, within GFF3045at 58.946 kb on - strand, within GFF3045at 58.969 kb on + strand, within GFF3045

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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58,026 + GFF3044 0.13 -0.4
58,027 - GFF3044 0.14 -0.5
58,030 + GFF3044 0.17 -2.9
58,031 - GFF3044 0.17 +0.0
58,031 - GFF3044 0.17 -0.3
58,058 - GFF3044 0.39 -0.2
58,172 - +1.8
58,436 + +0.2
58,800 + GFF3045 0.23 -0.6
58,858 + GFF3045 0.28 -0.4
58,896 + GFF3045 0.30 -0.4
58,945 + GFF3045 0.34 +0.2
58,946 - GFF3045 0.34 +0.4
58,969 + GFF3045 0.35 -0.1

Or see this region's nucleotide sequence