Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2629

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2628 and GFF2629 are separated by 463 nucleotidesGFF2629 and GFF2630 are separated by 270 nucleotidesGFF2630 and GFF2631 are separated by 116 nucleotides GFF2628 - putative membrane protein, at 152,494 to 154,044 GFF2628 GFF2629 - Putative SAM-dependent methyltransferases, at 154,508 to 155,170 GFF2629 GFF2630 - Cytochrome b(561), at 155,441 to 155,971 GFF2630 GFF2631 - Protein ydcF, at 156,088 to 156,888 GFF2631 Position (kb) 154 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1at 153.765 kb on + strand, within GFF2628at 153.863 kb on - strand, within GFF2628at 154.563 kb on + strandat 154.630 kb on - strand, within GFF2629at 154.871 kb on + strand, within GFF2629at 154.887 kb on + strand, within GFF2629at 155.053 kb on + strand, within GFF2629at 155.280 kb on + strandat 155.280 kb on + strandat 155.280 kb on + strandat 155.281 kb on - strandat 155.381 kb on + strandat 155.382 kb on - strandat 155.382 kb on - strandat 155.431 kb on + strandat 155.476 kb on + strandat 155.476 kb on + strandat 155.538 kb on + strand, within GFF2630at 155.617 kb on + strand, within GFF2630at 155.617 kb on + strand, within GFF2630at 155.655 kb on + strand, within GFF2630at 155.656 kb on - strand, within GFF2630at 155.717 kb on + strand, within GFF2630at 155.807 kb on + strand, within GFF2630at 155.846 kb on - strand, within GFF2630at 155.867 kb on - strand, within GFF2630at 156.008 kb on - strandat 156.019 kb on - strandat 156.021 kb on - strandat 156.095 kb on - strandat 156.126 kb on + strandat 156.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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153,765 + GFF2628 0.82 +0.9
153,863 - GFF2628 0.88 -0.8
154,563 + +0.0
154,630 - GFF2629 0.18 -0.6
154,871 + GFF2629 0.55 -0.2
154,887 + GFF2629 0.57 +0.6
155,053 + GFF2629 0.82 +0.6
155,280 + -0.1
155,280 + -0.3
155,280 + -0.8
155,281 - -0.1
155,381 + +0.4
155,382 - +0.2
155,382 - -0.6
155,431 + -0.2
155,476 + -0.7
155,476 + -0.8
155,538 + GFF2630 0.18 -0.5
155,617 + GFF2630 0.33 -0.0
155,617 + GFF2630 0.33 -0.1
155,655 + GFF2630 0.40 +0.4
155,656 - GFF2630 0.40 -2.9
155,717 + GFF2630 0.52 -0.7
155,807 + GFF2630 0.69 -0.4
155,846 - GFF2630 0.76 -0.5
155,867 - GFF2630 0.80 -1.2
156,008 - -1.8
156,019 - -0.1
156,021 - +0.2
156,095 - -1.8
156,126 + +0.7
156,142 + -1.9

Or see this region's nucleotide sequence