Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2493

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2491 and GFF2492 are separated by 3 nucleotidesGFF2492 and GFF2493 are separated by 54 nucleotidesGFF2493 and GFF2494 overlap by 25 nucleotides GFF2491 - Putative transport protein, at 10,202 to 11,140 GFF2491 GFF2492 - Putative transport protein, at 11,144 to 11,542 GFF2492 GFF2493 - FIG01047459: hypothetical protein, at 11,597 to 11,710 GFF2493 GFF2494 - D-mannonate oxidoreductase (EC 1.1.1.57), at 11,686 to 13,152 GFF2494 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1at 10.739 kb on - strand, within GFF2491at 11.395 kb on - strand, within GFF2492at 11.411 kb on + strand, within GFF2492at 11.419 kb on + strand, within GFF2492at 11.673 kb on + strand, within GFF2493at 11.912 kb on - strand, within GFF2494at 11.912 kb on - strand, within GFF2494at 12.168 kb on + strand, within GFF2494at 12.169 kb on - strand, within GFF2494at 12.217 kb on - strand, within GFF2494at 12.280 kb on + strand, within GFF2494at 12.468 kb on + strand, within GFF2494at 12.615 kb on + strand, within GFF2494at 12.616 kb on - strand, within GFF2494at 12.616 kb on - strand, within GFF2494at 12.618 kb on + strand, within GFF2494at 12.708 kb on - strand, within GFF2494

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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10,739 - GFF2491 0.57 -1.2
11,395 - GFF2492 0.63 -1.1
11,411 + GFF2492 0.67 -0.2
11,419 + GFF2492 0.69 -0.2
11,673 + GFF2493 0.67 -0.8
11,912 - GFF2494 0.15 +0.3
11,912 - GFF2494 0.15 +1.5
12,168 + GFF2494 0.33 -0.7
12,169 - GFF2494 0.33 -0.5
12,217 - GFF2494 0.36 -0.5
12,280 + GFF2494 0.40 -0.0
12,468 + GFF2494 0.53 -2.0
12,615 + GFF2494 0.63 -0.1
12,616 - GFF2494 0.63 -0.8
12,616 - GFF2494 0.63 +0.1
12,618 + GFF2494 0.64 -0.0
12,708 - GFF2494 0.70 +1.7

Or see this region's nucleotide sequence