Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2482

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2482 and GFF2483 are separated by 98 nucleotides GFF2482 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 35 to 2,470 GFF2482 GFF2483 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 2,569 to 5,007 GFF2483 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -1 0 1 2at 0.381 kb on + strand, within GFF2482at 0.381 kb on + strand, within GFF2482at 0.454 kb on - strand, within GFF2482at 0.529 kb on - strand, within GFF2482at 0.748 kb on - strand, within GFF2482at 0.748 kb on - strand, within GFF2482at 0.749 kb on + strand, within GFF2482at 0.749 kb on + strand, within GFF2482at 0.750 kb on - strand, within GFF2482at 0.854 kb on - strand, within GFF2482at 0.927 kb on + strand, within GFF2482at 0.928 kb on - strand, within GFF2482at 0.979 kb on + strand, within GFF2482at 1.040 kb on - strand, within GFF2482at 1.042 kb on + strand, within GFF2482at 1.193 kb on - strand, within GFF2482at 1.275 kb on - strand, within GFF2482at 1.442 kb on - strand, within GFF2482at 1.481 kb on - strand, within GFF2482at 1.483 kb on - strand, within GFF2482at 1.671 kb on + strand, within GFF2482at 1.728 kb on + strand, within GFF2482at 1.731 kb on + strand, within GFF2482at 1.731 kb on + strand, within GFF2482at 1.731 kb on + strand, within GFF2482at 1.732 kb on - strand, within GFF2482at 1.732 kb on - strand, within GFF2482at 1.807 kb on + strand, within GFF2482at 1.843 kb on + strand, within GFF2482at 1.878 kb on + strand, within GFF2482at 1.948 kb on + strand, within GFF2482at 1.949 kb on - strand, within GFF2482at 1.985 kb on + strand, within GFF2482at 2.063 kb on - strand, within GFF2482at 2.063 kb on - strand, within GFF2482at 2.171 kb on + strand, within GFF2482at 2.172 kb on - strand, within GFF2482at 2.207 kb on - strand, within GFF2482at 2.225 kb on + strand, within GFF2482at 2.226 kb on - strand, within GFF2482at 2.282 kb on - strandat 2.598 kb on + strandat 2.698 kb on - strandat 2.698 kb on - strandat 2.914 kb on - strand, within GFF2483at 2.979 kb on + strand, within GFF2483at 2.985 kb on + strand, within GFF2483at 2.988 kb on - strand, within GFF2483at 3.075 kb on + strand, within GFF2483at 3.164 kb on + strand, within GFF2483at 3.164 kb on + strand, within GFF2483at 3.327 kb on - strand, within GFF2483at 3.461 kb on + strand, within GFF2483

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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381 + GFF2482 0.14 -0.7
381 + GFF2482 0.14 +0.2
454 - GFF2482 0.17 -0.9
529 - GFF2482 0.20 +0.2
748 - GFF2482 0.29 -0.5
748 - GFF2482 0.29 +0.1
749 + GFF2482 0.29 -0.2
749 + GFF2482 0.29 +1.2
750 - GFF2482 0.29 +0.2
854 - GFF2482 0.34 -0.4
927 + GFF2482 0.37 +0.2
928 - GFF2482 0.37 -0.0
979 + GFF2482 0.39 -0.5
1,040 - GFF2482 0.41 +0.3
1,042 + GFF2482 0.41 +0.2
1,193 - GFF2482 0.48 -0.9
1,275 - GFF2482 0.51 -0.6
1,442 - GFF2482 0.58 +0.2
1,481 - GFF2482 0.59 -0.1
1,483 - GFF2482 0.59 +0.2
1,671 + GFF2482 0.67 +0.8
1,728 + GFF2482 0.69 -0.0
1,731 + GFF2482 0.70 +0.9
1,731 + GFF2482 0.70 +0.2
1,731 + GFF2482 0.70 +0.0
1,732 - GFF2482 0.70 -0.1
1,732 - GFF2482 0.70 -0.7
1,807 + GFF2482 0.73 -0.3
1,843 + GFF2482 0.74 +0.4
1,878 + GFF2482 0.76 +0.2
1,948 + GFF2482 0.79 -0.2
1,949 - GFF2482 0.79 +0.1
1,985 + GFF2482 0.80 +0.1
2,063 - GFF2482 0.83 +1.8
2,063 - GFF2482 0.83 +1.4
2,171 + GFF2482 0.88 -0.2
2,172 - GFF2482 0.88 +0.6
2,207 - GFF2482 0.89 -0.1
2,225 + GFF2482 0.90 +0.3
2,226 - GFF2482 0.90 +0.5
2,282 - +0.2
2,598 + -0.6
2,698 - -0.2
2,698 - -0.9
2,914 - GFF2483 0.14 +0.5
2,979 + GFF2483 0.17 -0.2
2,985 + GFF2483 0.17 +2.2
2,988 - GFF2483 0.17 -0.8
3,075 + GFF2483 0.21 -0.7
3,164 + GFF2483 0.24 -0.6
3,164 + GFF2483 0.24 +0.6
3,327 - GFF2483 0.31 +0.3
3,461 + GFF2483 0.37 -0.5

Or see this region's nucleotide sequence