Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2190

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2189 and GFF2190 are separated by 185 nucleotidesGFF2190 and GFF2191 are separated by 387 nucleotides GFF2189 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 37,922 to 39,622 GFF2189 GFF2190 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 39,808 to 41,769 GFF2190 GFF2191 - Beta-lactamase class C and other penicillin binding proteins, at 42,157 to 43,455 GFF2191 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -2 -1 0 1at 38.871 kb on + strand, within GFF2189at 38.871 kb on + strand, within GFF2189at 38.871 kb on + strand, within GFF2189at 38.872 kb on - strand, within GFF2189at 39.109 kb on + strand, within GFF2189at 39.136 kb on + strand, within GFF2189at 39.137 kb on - strand, within GFF2189at 39.141 kb on - strand, within GFF2189at 39.240 kb on + strand, within GFF2189at 39.250 kb on + strand, within GFF2189at 39.251 kb on - strand, within GFF2189at 39.354 kb on + strand, within GFF2189at 39.557 kb on - strandat 39.571 kb on + strandat 39.572 kb on - strandat 39.573 kb on + strandat 39.702 kb on + strandat 39.702 kb on + strandat 39.703 kb on - strandat 39.703 kb on - strandat 39.753 kb on - strandat 39.819 kb on + strandat 39.832 kb on - strandat 39.934 kb on - strandat 40.006 kb on - strand, within GFF2190at 40.032 kb on + strand, within GFF2190at 40.032 kb on + strand, within GFF2190at 40.035 kb on + strand, within GFF2190at 40.122 kb on - strand, within GFF2190at 40.674 kb on + strand, within GFF2190at 40.675 kb on - strand, within GFF2190at 40.713 kb on + strand, within GFF2190at 40.723 kb on + strand, within GFF2190at 40.724 kb on - strand, within GFF2190at 40.725 kb on + strand, within GFF2190at 40.725 kb on + strand, within GFF2190at 40.775 kb on + strand, within GFF2190at 41.044 kb on + strand, within GFF2190at 41.045 kb on - strand, within GFF2190at 41.122 kb on + strand, within GFF2190at 41.123 kb on - strand, within GFF2190at 41.258 kb on + strand, within GFF2190at 41.302 kb on + strand, within GFF2190at 41.382 kb on + strand, within GFF2190at 41.412 kb on + strand, within GFF2190at 41.492 kb on + strand, within GFF2190at 41.565 kb on + strand, within GFF2190at 41.565 kb on + strand, within GFF2190at 41.602 kb on - strandat 41.614 kb on - strandat 41.768 kb on - strandat 41.768 kb on - strandat 42.025 kb on - strandat 42.144 kb on - strandat 42.173 kb on + strandat 42.173 kb on + strandat 42.197 kb on + strandat 42.215 kb on - strandat 42.298 kb on - strand, within GFF2191at 42.350 kb on + strand, within GFF2191at 42.627 kb on + strand, within GFF2191at 42.627 kb on + strand, within GFF2191at 42.628 kb on - strand, within GFF2191at 42.739 kb on - strand, within GFF2191

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
remove
38,871 + GFF2189 0.56 -0.8
38,871 + GFF2189 0.56 +0.0
38,871 + GFF2189 0.56 -0.1
38,872 - GFF2189 0.56 +0.9
39,109 + GFF2189 0.70 +0.3
39,136 + GFF2189 0.71 +0.3
39,137 - GFF2189 0.71 +0.1
39,141 - GFF2189 0.72 -0.8
39,240 + GFF2189 0.77 -0.0
39,250 + GFF2189 0.78 -0.7
39,251 - GFF2189 0.78 +0.3
39,354 + GFF2189 0.84 -0.1
39,557 - -0.1
39,571 + +0.2
39,572 - -1.8
39,573 + +0.7
39,702 + +0.6
39,702 + +0.3
39,703 - -0.3
39,703 - +0.4
39,753 - -0.9
39,819 + +0.7
39,832 - -0.1
39,934 - +0.0
40,006 - GFF2190 0.10 +0.2
40,032 + GFF2190 0.11 -0.3
40,032 + GFF2190 0.11 -0.8
40,035 + GFF2190 0.12 -0.1
40,122 - GFF2190 0.16 +0.2
40,674 + GFF2190 0.44 +0.6
40,675 - GFF2190 0.44 +0.2
40,713 + GFF2190 0.46 -0.4
40,723 + GFF2190 0.47 -0.3
40,724 - GFF2190 0.47 +0.6
40,725 + GFF2190 0.47 +0.3
40,725 + GFF2190 0.47 +0.2
40,775 + GFF2190 0.49 +0.1
41,044 + GFF2190 0.63 -0.1
41,045 - GFF2190 0.63 +0.3
41,122 + GFF2190 0.67 +0.2
41,123 - GFF2190 0.67 -0.3
41,258 + GFF2190 0.74 -0.1
41,302 + GFF2190 0.76 +0.7
41,382 + GFF2190 0.80 -0.0
41,412 + GFF2190 0.82 -0.2
41,492 + GFF2190 0.86 +0.9
41,565 + GFF2190 0.90 +0.3
41,565 + GFF2190 0.90 +0.2
41,602 - +0.7
41,614 - +0.0
41,768 - -0.2
41,768 - -0.1
42,025 - -0.0
42,144 - +0.1
42,173 + +0.0
42,173 + +0.0
42,197 + +0.6
42,215 - +0.1
42,298 - GFF2191 0.11 -0.3
42,350 + GFF2191 0.15 -0.5
42,627 + GFF2191 0.36 -1.6
42,627 + GFF2191 0.36 +0.0
42,628 - GFF2191 0.36 +1.5
42,739 - GFF2191 0.45 -0.4

Or see this region's nucleotide sequence