Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2012

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2011 and GFF2012 are separated by 58 nucleotidesGFF2012 and GFF2013 are separated by 340 nucleotides GFF2011 - Putative permease, at 21,955 to 23,217 GFF2011 GFF2012 - FxsA protein, at 23,276 to 23,752 GFF2012 GFF2013 - Aspartate ammonia-lyase (EC 4.3.1.1), at 24,093 to 25,529 GFF2013 Position (kb) 23 24Strain fitness (log2 ratio) -1 0 1 2at 22.344 kb on - strand, within GFF2011at 22.359 kb on + strand, within GFF2011at 22.365 kb on - strand, within GFF2011at 22.371 kb on - strand, within GFF2011at 22.373 kb on + strand, within GFF2011at 22.374 kb on - strand, within GFF2011at 22.436 kb on + strand, within GFF2011at 22.709 kb on - strand, within GFF2011at 22.794 kb on + strand, within GFF2011at 22.831 kb on + strand, within GFF2011at 22.832 kb on - strand, within GFF2011at 22.832 kb on - strand, within GFF2011at 22.832 kb on - strand, within GFF2011at 22.874 kb on - strand, within GFF2011at 22.976 kb on - strand, within GFF2011at 23.011 kb on + strand, within GFF2011at 23.028 kb on + strand, within GFF2011at 23.038 kb on + strand, within GFF2011at 23.049 kb on + strand, within GFF2011at 23.050 kb on - strand, within GFF2011at 23.124 kb on - strandat 23.124 kb on - strandat 23.124 kb on - strandat 23.154 kb on - strandat 23.154 kb on - strandat 23.156 kb on - strandat 23.180 kb on + strandat 23.180 kb on + strandat 23.181 kb on - strandat 23.181 kb on - strandat 23.223 kb on - strandat 23.254 kb on + strandat 23.272 kb on - strandat 23.297 kb on - strandat 23.405 kb on + strand, within GFF2012at 23.608 kb on + strand, within GFF2012at 23.638 kb on + strand, within GFF2012at 23.639 kb on - strand, within GFF2012at 23.699 kb on - strand, within GFF2012at 23.858 kb on - strandat 23.858 kb on - strandat 23.858 kb on - strandat 23.858 kb on - strandat 23.876 kb on - strandat 23.876 kb on - strandat 23.907 kb on - strandat 23.920 kb on + strandat 24.037 kb on + strandat 24.038 kb on - strandat 24.156 kb on + strandat 24.157 kb on - strandat 24.157 kb on - strandat 24.159 kb on + strandat 24.159 kb on + strandat 24.195 kb on + strandat 24.195 kb on + strandat 24.196 kb on - strandat 24.200 kb on + strandat 24.352 kb on + strand, within GFF2013at 24.353 kb on + strand, within GFF2013at 24.353 kb on + strand, within GFF2013at 24.385 kb on - strand, within GFF2013at 24.477 kb on + strand, within GFF2013at 24.509 kb on + strand, within GFF2013at 24.510 kb on - strand, within GFF2013

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
remove
22,344 - GFF2011 0.31 -1.0
22,359 + GFF2011 0.32 -0.4
22,365 - GFF2011 0.32 -0.4
22,371 - GFF2011 0.33 -0.1
22,373 + GFF2011 0.33 +0.4
22,374 - GFF2011 0.33 +2.0
22,436 + GFF2011 0.38 -0.1
22,709 - GFF2011 0.60 -0.2
22,794 + GFF2011 0.66 -0.1
22,831 + GFF2011 0.69 +1.0
22,832 - GFF2011 0.69 -1.3
22,832 - GFF2011 0.69 -1.5
22,832 - GFF2011 0.69 -0.7
22,874 - GFF2011 0.73 -1.3
22,976 - GFF2011 0.81 +0.1
23,011 + GFF2011 0.84 -0.3
23,028 + GFF2011 0.85 +0.2
23,038 + GFF2011 0.86 -0.7
23,049 + GFF2011 0.87 +0.1
23,050 - GFF2011 0.87 -0.5
23,124 - -0.7
23,124 - +0.3
23,124 - +1.2
23,154 - +0.4
23,154 - +0.5
23,156 - -0.0
23,180 + +0.9
23,180 + +0.2
23,181 - -0.2
23,181 - +1.3
23,223 - -1.3
23,254 + +0.1
23,272 - +0.1
23,297 - +0.3
23,405 + GFF2012 0.27 -1.3
23,608 + GFF2012 0.70 +0.0
23,638 + GFF2012 0.76 -0.5
23,639 - GFF2012 0.76 -0.5
23,699 - GFF2012 0.89 -0.3
23,858 - -0.1
23,858 - +1.2
23,858 - -0.5
23,858 - +0.5
23,876 - +0.6
23,876 - +0.5
23,907 - +0.7
23,920 + +0.2
24,037 + -0.5
24,038 - +0.7
24,156 + -0.3
24,157 - -0.2
24,157 - +0.3
24,159 + +0.3
24,159 + +1.0
24,195 + -0.1
24,195 + -1.3
24,196 - +0.0
24,200 + -0.0
24,352 + GFF2013 0.18 +0.5
24,353 + GFF2013 0.18 +0.1
24,353 + GFF2013 0.18 +0.1
24,385 - GFF2013 0.20 -0.3
24,477 + GFF2013 0.27 +1.0
24,509 + GFF2013 0.29 +0.2
24,510 - GFF2013 0.29 -0.1

Or see this region's nucleotide sequence