Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1270

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1268 and GFF1269 are separated by 66 nucleotidesGFF1269 and GFF1270 are separated by 235 nucleotides GFF1268 - Putative antirestriction protein, at 92,405 to 92,839 GFF1268 GFF1269 - FIG074102: hypothetical protein, at 92,906 to 93,340 GFF1269 GFF1270 - DNA polymerase III theta subunit (EC 2.7.7.7), at 93,576 to 93,899 GFF1270 Position (kb) 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.761 kb on + strand, within GFF1268at 92.761 kb on + strand, within GFF1268at 92.762 kb on - strand, within GFF1268at 92.762 kb on - strand, within GFF1268at 92.794 kb on + strand, within GFF1268at 92.795 kb on - strand, within GFF1268at 92.795 kb on - strand, within GFF1268at 92.819 kb on - strandat 92.872 kb on + strandat 92.906 kb on - strandat 92.906 kb on - strandat 92.910 kb on - strandat 93.042 kb on + strand, within GFF1269at 93.042 kb on + strand, within GFF1269at 93.101 kb on - strand, within GFF1269at 93.101 kb on - strand, within GFF1269at 93.126 kb on + strand, within GFF1269at 93.126 kb on + strand, within GFF1269at 93.126 kb on + strand, within GFF1269at 93.127 kb on - strand, within GFF1269at 93.127 kb on - strand, within GFF1269at 93.127 kb on - strand, within GFF1269at 93.198 kb on + strand, within GFF1269at 93.335 kb on + strandat 93.335 kb on + strandat 93.335 kb on + strandat 93.335 kb on + strandat 93.345 kb on + strandat 93.348 kb on + strandat 93.348 kb on + strandat 93.537 kb on + strandat 93.537 kb on + strandat 93.537 kb on + strandat 93.538 kb on - strandat 93.543 kb on + strandat 93.786 kb on - strand, within GFF1270at 93.786 kb on - strand, within GFF1270at 93.921 kb on + strandat 93.921 kb on + strandat 93.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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92,759 + GFF1268 0.81 -0.1
92,759 + GFF1268 0.81 -0.8
92,759 + GFF1268 0.81 +0.2
92,759 + GFF1268 0.81 -0.6
92,759 + GFF1268 0.81 +1.7
92,761 + GFF1268 0.82 -0.1
92,761 + GFF1268 0.82 -0.3
92,762 - GFF1268 0.82 +1.0
92,762 - GFF1268 0.82 +0.5
92,794 + GFF1268 0.89 -0.0
92,795 - GFF1268 0.90 +0.4
92,795 - GFF1268 0.90 +0.0
92,819 - +0.0
92,872 + -0.4
92,906 - -3.1
92,906 - +0.1
92,910 - +0.1
93,042 + GFF1269 0.31 -0.2
93,042 + GFF1269 0.31 +0.2
93,101 - GFF1269 0.45 +0.2
93,101 - GFF1269 0.45 -1.5
93,126 + GFF1269 0.51 +0.4
93,126 + GFF1269 0.51 -0.4
93,126 + GFF1269 0.51 -0.2
93,127 - GFF1269 0.51 -0.6
93,127 - GFF1269 0.51 -0.3
93,127 - GFF1269 0.51 +0.0
93,198 + GFF1269 0.67 +0.4
93,335 + -1.0
93,335 + -0.5
93,335 + +1.0
93,335 + +0.4
93,345 + +0.1
93,348 + +0.2
93,348 + +0.5
93,537 + -0.1
93,537 + -0.6
93,537 + -0.2
93,538 - -0.4
93,543 + +0.4
93,786 - GFF1270 0.65 -0.1
93,786 - GFF1270 0.65 -1.2
93,921 + -0.2
93,921 + +0.1
93,922 - -0.1

Or see this region's nucleotide sequence