Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_923

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_921 and PfGW456L13_922 overlap by 4 nucleotidesPfGW456L13_922 and PfGW456L13_923 are separated by 33 nucleotidesPfGW456L13_923 and PfGW456L13_924 are separated by 193 nucleotides PfGW456L13_921 - Alkanesulfonates transport system permease protein, at 1,032,269 to 1,033,051 _921 PfGW456L13_922 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 1,033,048 to 1,033,854 _922 PfGW456L13_923 - Organosulfonate utilization protein SsuF, at 1,033,888 to 1,034,103 _923 PfGW456L13_924 - Transcriptional regulator, TetR family, at 1,034,297 to 1,034,929 _924 Position (kb) 1033 1034 1035Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1032.947 kb on + strand, within PfGW456L13_921at 1033.022 kb on + strandat 1033.022 kb on + strandat 1033.209 kb on + strand, within PfGW456L13_922at 1033.209 kb on + strand, within PfGW456L13_922at 1033.209 kb on + strand, within PfGW456L13_922at 1033.210 kb on - strand, within PfGW456L13_922at 1033.830 kb on + strandat 1033.852 kb on + strandat 1033.893 kb on + strandat 1033.893 kb on + strandat 1033.893 kb on + strandat 1033.894 kb on - strandat 1033.894 kb on - strandat 1033.894 kb on - strandat 1034.101 kb on + strandat 1034.101 kb on + strandat 1034.101 kb on + strandat 1034.101 kb on + strandat 1034.102 kb on - strandat 1034.102 kb on - strandat 1034.102 kb on - strandat 1034.102 kb on - strandat 1034.115 kb on - strandat 1034.218 kb on + strandat 1034.218 kb on + strandat 1034.218 kb on + strandat 1034.218 kb on + strandat 1034.218 kb on + strandat 1034.218 kb on + strandat 1034.219 kb on - strandat 1034.219 kb on - strandat 1034.298 kb on + strandat 1034.299 kb on - strandat 1034.299 kb on - strandat 1034.319 kb on + strandat 1034.319 kb on + strandat 1034.319 kb on + strandat 1034.319 kb on + strandat 1034.319 kb on + strandat 1034.320 kb on - strandat 1034.320 kb on - strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.331 kb on + strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.332 kb on - strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.343 kb on + strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.344 kb on - strandat 1034.418 kb on + strand, within PfGW456L13_924at 1034.418 kb on + strand, within PfGW456L13_924at 1034.418 kb on + strand, within PfGW456L13_924at 1034.418 kb on + strand, within PfGW456L13_924at 1034.418 kb on + strand, within PfGW456L13_924at 1034.418 kb on + strand, within PfGW456L13_924at 1034.418 kb on + strand, within PfGW456L13_924at 1034.419 kb on - strand, within PfGW456L13_924at 1034.419 kb on - strand, within PfGW456L13_924at 1034.419 kb on - strand, within PfGW456L13_924at 1034.419 kb on - strand, within PfGW456L13_924at 1034.419 kb on - strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.613 kb on + strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.614 kb on - strand, within PfGW456L13_924at 1034.769 kb on + strand, within PfGW456L13_924at 1034.769 kb on + strand, within PfGW456L13_924at 1034.812 kb on - strand, within PfGW456L13_924at 1034.812 kb on - strand, within PfGW456L13_924at 1034.959 kb on + strandat 1034.959 kb on + strandat 1034.959 kb on + strandat 1034.959 kb on + strandat 1034.959 kb on + strandat 1034.959 kb on + strandat 1034.959 kb on + strandat 1034.959 kb on + strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.960 kb on - strandat 1034.983 kb on + strandat 1035.048 kb on + strandat 1035.048 kb on + strandat 1035.049 kb on - strandat 1035.049 kb on - strandat 1035.049 kb on - strandat 1035.057 kb on + strandat 1035.058 kb on - strandat 1035.058 kb on - strandat 1035.058 kb on - strandat 1035.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,032,947 + PfGW456L13_921 0.87 -0.1
1,033,022 + -0.4
1,033,022 + +0.7
1,033,209 + PfGW456L13_922 0.20 +1.0
1,033,209 + PfGW456L13_922 0.20 -0.4
1,033,209 + PfGW456L13_922 0.20 +0.1
1,033,210 - PfGW456L13_922 0.20 -0.6
1,033,830 + -0.6
1,033,852 + -0.0
1,033,893 + -0.2
1,033,893 + -0.0
1,033,893 + -0.4
1,033,894 - -0.5
1,033,894 - +0.4
1,033,894 - +0.4
1,034,101 + +0.8
1,034,101 + -0.2
1,034,101 + +0.5
1,034,101 + +0.3
1,034,102 - -0.7
1,034,102 - -0.7
1,034,102 - +1.4
1,034,102 - -1.2
1,034,115 - +0.5
1,034,218 + -1.4
1,034,218 + +0.7
1,034,218 + +0.8
1,034,218 + +0.1
1,034,218 + -1.8
1,034,218 + +0.9
1,034,219 - -0.2
1,034,219 - -0.3
1,034,298 + +0.6
1,034,299 - -3.0
1,034,299 - +0.6
1,034,319 + -0.5
1,034,319 + -0.1
1,034,319 + -0.1
1,034,319 + +0.5
1,034,319 + +0.1
1,034,320 - +1.3
1,034,320 - +0.8
1,034,331 + -1.1
1,034,331 + -0.1
1,034,331 + +0.2
1,034,331 + -1.2
1,034,331 + -0.0
1,034,331 + -0.2
1,034,331 + +0.5
1,034,331 + +0.4
1,034,331 + +0.2
1,034,331 + +0.4
1,034,331 + -2.7
1,034,331 + +0.7
1,034,331 + +0.8
1,034,332 - +0.7
1,034,332 - -0.4
1,034,332 - -0.3
1,034,332 - +0.5
1,034,332 - -0.8
1,034,332 - -0.6
1,034,332 - +0.2
1,034,332 - -0.5
1,034,332 - +0.2
1,034,332 - -2.5
1,034,343 + -0.1
1,034,343 + +0.2
1,034,343 + -0.0
1,034,343 + -0.6
1,034,343 + +0.7
1,034,343 + +1.1
1,034,343 + -1.4
1,034,343 + +0.4
1,034,343 + -0.5
1,034,343 + +0.2
1,034,343 + +0.3
1,034,343 + -0.3
1,034,344 - -0.9
1,034,344 - -0.2
1,034,344 - -0.8
1,034,344 - +0.3
1,034,344 - -1.4
1,034,344 - +0.4
1,034,344 - -0.8
1,034,344 - +0.7
1,034,344 - -1.0
1,034,344 - +1.4
1,034,344 - +0.4
1,034,344 - -0.2
1,034,344 - +0.4
1,034,344 - -0.5
1,034,344 - +0.1
1,034,344 - -0.7
1,034,344 - +0.0
1,034,344 - +0.5
1,034,344 - +0.2
1,034,344 - +0.2
1,034,344 - -1.0
1,034,418 + PfGW456L13_924 0.19 -0.3
1,034,418 + PfGW456L13_924 0.19 +0.2
1,034,418 + PfGW456L13_924 0.19 -0.5
1,034,418 + PfGW456L13_924 0.19 +1.0
1,034,418 + PfGW456L13_924 0.19 +0.2
1,034,418 + PfGW456L13_924 0.19 +0.6
1,034,418 + PfGW456L13_924 0.19 +0.7
1,034,419 - PfGW456L13_924 0.19 +0.8
1,034,419 - PfGW456L13_924 0.19 +0.4
1,034,419 - PfGW456L13_924 0.19 -0.9
1,034,419 - PfGW456L13_924 0.19 -1.8
1,034,419 - PfGW456L13_924 0.19 -0.8
1,034,613 + PfGW456L13_924 0.50 -0.2
1,034,613 + PfGW456L13_924 0.50 +0.4
1,034,613 + PfGW456L13_924 0.50 +0.8
1,034,613 + PfGW456L13_924 0.50 -0.0
1,034,613 + PfGW456L13_924 0.50 -2.6
1,034,613 + PfGW456L13_924 0.50 -1.3
1,034,613 + PfGW456L13_924 0.50 +0.2
1,034,613 + PfGW456L13_924 0.50 +0.1
1,034,613 + PfGW456L13_924 0.50 -0.3
1,034,613 + PfGW456L13_924 0.50 +1.1
1,034,613 + PfGW456L13_924 0.50 -0.0
1,034,613 + PfGW456L13_924 0.50 +0.4
1,034,613 + PfGW456L13_924 0.50 -0.8
1,034,613 + PfGW456L13_924 0.50 +0.9
1,034,613 + PfGW456L13_924 0.50 -0.1
1,034,613 + PfGW456L13_924 0.50 +0.4
1,034,613 + PfGW456L13_924 0.50 +0.1
1,034,613 + PfGW456L13_924 0.50 +0.4
1,034,613 + PfGW456L13_924 0.50 +0.7
1,034,613 + PfGW456L13_924 0.50 -0.4
1,034,614 - PfGW456L13_924 0.50 -1.4
1,034,614 - PfGW456L13_924 0.50 -0.6
1,034,614 - PfGW456L13_924 0.50 +0.0
1,034,614 - PfGW456L13_924 0.50 -0.6
1,034,614 - PfGW456L13_924 0.50 -1.2
1,034,614 - PfGW456L13_924 0.50 -0.1
1,034,614 - PfGW456L13_924 0.50 -0.3
1,034,614 - PfGW456L13_924 0.50 -0.6
1,034,614 - PfGW456L13_924 0.50 +0.3
1,034,614 - PfGW456L13_924 0.50 +0.1
1,034,614 - PfGW456L13_924 0.50 +0.4
1,034,614 - PfGW456L13_924 0.50 -1.5
1,034,614 - PfGW456L13_924 0.50 +0.0
1,034,614 - PfGW456L13_924 0.50 -0.7
1,034,614 - PfGW456L13_924 0.50 -0.9
1,034,614 - PfGW456L13_924 0.50 -0.2
1,034,614 - PfGW456L13_924 0.50 -1.2
1,034,769 + PfGW456L13_924 0.75 +0.7
1,034,769 + PfGW456L13_924 0.75 +1.1
1,034,812 - PfGW456L13_924 0.81 -0.4
1,034,812 - PfGW456L13_924 0.81 +0.5
1,034,959 + -0.1
1,034,959 + +0.5
1,034,959 + +0.6
1,034,959 + -0.3
1,034,959 + +0.7
1,034,959 + +0.3
1,034,959 + -0.2
1,034,959 + +0.5
1,034,960 - -0.2
1,034,960 - -1.2
1,034,960 - -0.6
1,034,960 - +0.7
1,034,960 - -0.1
1,034,960 - +2.4
1,034,960 - -0.9
1,034,960 - +0.6
1,034,960 - -0.9
1,034,960 - +0.7
1,034,960 - -0.7
1,034,983 + -0.0
1,035,048 + -0.3
1,035,048 + +0.2
1,035,049 - -0.1
1,035,049 - -0.2
1,035,049 - +1.5
1,035,057 + -1.5
1,035,058 - -1.5
1,035,058 - -0.3
1,035,058 - +0.9
1,035,058 - -0.9

Or see this region's nucleotide sequence