Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_449

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_447 and PfGW456L13_448 are separated by 55 nucleotidesPfGW456L13_448 and PfGW456L13_449 are separated by 48 nucleotidesPfGW456L13_449 and PfGW456L13_450 are separated by 23 nucleotides PfGW456L13_447 - FIG00957011: hypothetical protein, at 511,558 to 512,322 _447 PfGW456L13_448 - hypothetical protein, at 512,378 to 512,506 _448 PfGW456L13_449 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 512,555 to 513,787 _449 PfGW456L13_450 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 513,811 to 515,004 _450 Position (kb) 512 513 514Strain fitness (log2 ratio) -2 -1 0 1 2at 511.670 kb on - strand, within PfGW456L13_447at 511.720 kb on + strand, within PfGW456L13_447at 511.720 kb on + strand, within PfGW456L13_447at 511.721 kb on - strand, within PfGW456L13_447at 511.721 kb on - strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.188 kb on + strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.189 kb on - strand, within PfGW456L13_447at 512.266 kb on + strandat 512.364 kb on + strandat 512.411 kb on - strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.470 kb on + strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.471 kb on - strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.482 kb on + strand, within PfGW456L13_448at 512.483 kb on - strand, within PfGW456L13_448at 512.483 kb on - strand, within PfGW456L13_448at 512.486 kb on + strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.487 kb on - strand, within PfGW456L13_448at 512.764 kb on + strand, within PfGW456L13_449at 512.764 kb on + strand, within PfGW456L13_449at 512.764 kb on + strand, within PfGW456L13_449at 512.765 kb on - strand, within PfGW456L13_449at 512.783 kb on + strand, within PfGW456L13_449at 512.891 kb on - strand, within PfGW456L13_449at 513.056 kb on + strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.057 kb on - strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.428 kb on + strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.429 kb on - strand, within PfGW456L13_449at 513.725 kb on + strandat 513.810 kb on + strandat 513.810 kb on + strandat 513.810 kb on + strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 513.811 kb on - strandat 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.106 kb on + strand, within PfGW456L13_450at 514.106 kb on + strand, within PfGW456L13_450at 514.147 kb on + strand, within PfGW456L13_450at 514.148 kb on - strand, within PfGW456L13_450at 514.148 kb on - strand, within PfGW456L13_450at 514.204 kb on - strand, within PfGW456L13_450at 514.277 kb on - strand, within PfGW456L13_450at 514.294 kb on + strand, within PfGW456L13_450at 514.294 kb on + strand, within PfGW456L13_450at 514.295 kb on - strand, within PfGW456L13_450at 514.295 kb on - strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.451 kb on - strand, within PfGW456L13_450at 514.451 kb on - strand, within PfGW456L13_450

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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511,670 - PfGW456L13_447 0.15 +0.6
511,720 + PfGW456L13_447 0.21 +1.3
511,720 + PfGW456L13_447 0.21 +0.2
511,721 - PfGW456L13_447 0.21 +0.2
511,721 - PfGW456L13_447 0.21 -0.3
512,188 + PfGW456L13_447 0.82 -1.4
512,188 + PfGW456L13_447 0.82 +0.4
512,188 + PfGW456L13_447 0.82 +0.1
512,188 + PfGW456L13_447 0.82 -0.1
512,189 - PfGW456L13_447 0.82 +1.1
512,189 - PfGW456L13_447 0.82 -0.0
512,189 - PfGW456L13_447 0.82 -1.9
512,189 - PfGW456L13_447 0.82 -0.2
512,266 + +0.9
512,364 + +0.5
512,411 - PfGW456L13_448 0.26 +0.7
512,470 + PfGW456L13_448 0.71 -0.2
512,470 + PfGW456L13_448 0.71 -0.4
512,470 + PfGW456L13_448 0.71 -0.5
512,470 + PfGW456L13_448 0.71 +1.3
512,470 + PfGW456L13_448 0.71 +0.2
512,471 - PfGW456L13_448 0.72 -0.0
512,471 - PfGW456L13_448 0.72 -0.3
512,471 - PfGW456L13_448 0.72 -0.4
512,482 + PfGW456L13_448 0.81 -0.3
512,482 + PfGW456L13_448 0.81 +0.3
512,482 + PfGW456L13_448 0.81 -1.5
512,482 + PfGW456L13_448 0.81 +0.7
512,482 + PfGW456L13_448 0.81 +0.7
512,482 + PfGW456L13_448 0.81 -0.5
512,482 + PfGW456L13_448 0.81 -0.7
512,482 + PfGW456L13_448 0.81 +0.9
512,482 + PfGW456L13_448 0.81 -0.8
512,483 - PfGW456L13_448 0.81 +0.0
512,483 - PfGW456L13_448 0.81 +1.1
512,486 + PfGW456L13_448 0.84 +1.0
512,487 - PfGW456L13_448 0.84 +0.5
512,487 - PfGW456L13_448 0.84 -0.2
512,487 - PfGW456L13_448 0.84 -2.1
512,487 - PfGW456L13_448 0.84 -1.0
512,487 - PfGW456L13_448 0.84 -0.2
512,487 - PfGW456L13_448 0.84 -0.3
512,487 - PfGW456L13_448 0.84 -0.0
512,487 - PfGW456L13_448 0.84 -0.8
512,764 + PfGW456L13_449 0.17 -0.8
512,764 + PfGW456L13_449 0.17 -0.1
512,764 + PfGW456L13_449 0.17 -0.5
512,765 - PfGW456L13_449 0.17 +1.0
512,783 + PfGW456L13_449 0.18 -0.0
512,891 - PfGW456L13_449 0.27 +0.4
513,056 + PfGW456L13_449 0.41 +0.4
513,057 - PfGW456L13_449 0.41 +0.7
513,057 - PfGW456L13_449 0.41 +0.2
513,057 - PfGW456L13_449 0.41 +0.3
513,428 + PfGW456L13_449 0.71 -0.3
513,428 + PfGW456L13_449 0.71 +0.3
513,428 + PfGW456L13_449 0.71 +0.8
513,428 + PfGW456L13_449 0.71 +0.4
513,428 + PfGW456L13_449 0.71 -1.0
513,428 + PfGW456L13_449 0.71 +2.3
513,429 - PfGW456L13_449 0.71 +1.0
513,429 - PfGW456L13_449 0.71 +0.5
513,429 - PfGW456L13_449 0.71 -0.3
513,429 - PfGW456L13_449 0.71 +0.9
513,429 - PfGW456L13_449 0.71 -0.2
513,429 - PfGW456L13_449 0.71 +0.6
513,725 + -0.4
513,810 + -0.3
513,810 + +0.2
513,810 + +0.6
513,811 - +0.2
513,811 - -0.6
513,811 - +0.8
513,811 - +0.1
513,811 - -0.5
513,811 - +0.6
513,811 - -0.2
514,093 + PfGW456L13_450 0.24 +0.1
514,093 + PfGW456L13_450 0.24 -0.1
514,093 + PfGW456L13_450 0.24 +0.3
514,093 + PfGW456L13_450 0.24 -0.5
514,094 - PfGW456L13_450 0.24 +0.2
514,094 - PfGW456L13_450 0.24 +1.1
514,094 - PfGW456L13_450 0.24 +0.7
514,106 + PfGW456L13_450 0.25 +0.3
514,106 + PfGW456L13_450 0.25 +0.3
514,147 + PfGW456L13_450 0.28 +0.7
514,148 - PfGW456L13_450 0.28 -0.8
514,148 - PfGW456L13_450 0.28 -0.4
514,204 - PfGW456L13_450 0.33 -0.2
514,277 - PfGW456L13_450 0.39 +1.1
514,294 + PfGW456L13_450 0.40 +0.3
514,294 + PfGW456L13_450 0.40 +0.3
514,295 - PfGW456L13_450 0.41 +0.6
514,295 - PfGW456L13_450 0.41 +0.6
514,450 + PfGW456L13_450 0.54 -1.5
514,450 + PfGW456L13_450 0.54 -0.5
514,450 + PfGW456L13_450 0.54 -0.2
514,450 + PfGW456L13_450 0.54 +2.7
514,450 + PfGW456L13_450 0.54 +0.0
514,451 - PfGW456L13_450 0.54 -1.2
514,451 - PfGW456L13_450 0.54 +0.5

Or see this region's nucleotide sequence