Strain Fitness in Pseudomonas sp. RS175 around PFR28_04614

Experiment: Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
5,266,664	-		PFR28_04612	0.70	+0.5
5,266,713	+		PFR28_04612	0.76	+0.0
5,266,713	+		PFR28_04612	0.76	+1.1
5,266,713	+		PFR28_04612	0.76	-4.2
5,266,713	+		PFR28_04612	0.76	-0.1
5,266,713	+		PFR28_04612	0.76	+0.3
5,266,713	+		PFR28_04612	0.76	+1.9
5,266,713	+		PFR28_04612	0.76	+0.1
5,266,714	-		PFR28_04612	0.76	-0.8
5,266,714	-		PFR28_04612	0.76	-2.6
5,266,714	-		PFR28_04612	0.76	-3.7
5,266,714	-		PFR28_04612	0.76	-1.5
5,266,714	-		PFR28_04612	0.76	+0.1
5,266,714	-		PFR28_04612	0.76	+0.2
5,266,729	+		PFR28_04612	0.78	+1.7
5,266,729	+		PFR28_04612	0.78	-1.1
5,266,729	+		PFR28_04612	0.78	+0.6
5,266,729	+		PFR28_04612	0.78	+0.2
5,266,730	-		PFR28_04612	0.78	+0.6
5,266,730	-		PFR28_04612	0.78	-0.7
5,266,730	-		PFR28_04612	0.78	-1.4
5,266,730	-		PFR28_04612	0.78	-1.6
5,266,730	-		PFR28_04612	0.78	-0.9
5,266,730	-		PFR28_04612	0.78	+0.3
5,266,730	-		PFR28_04612	0.78	-4.3
5,266,758	+		PFR28_04612	0.82	-3.5
5,266,758	+		PFR28_04612	0.82	+1.6
5,266,758	+		PFR28_04612	0.82	-0.5
5,266,759	-		PFR28_04612	0.82	-0.1
5,266,759	-		PFR28_04612	0.82	-3.2
5,266,759	-		PFR28_04612	0.82	-0.2
5,266,887	+				-0.3
5,266,887	+				+0.1
5,266,904	+				-1.9
5,266,905	-				+0.7
5,266,905	-				+0.5
5,266,905	-				-0.8
5,266,905	-				+1.9
5,266,905	-				-1.0
5,266,963	-				-2.7
5,266,963	-				-0.2
5,266,979	-				+0.7
5,267,153	-		PFR28_04613	0.26	+3.3
5,267,165	+		PFR28_04613	0.28	+1.1
5,267,165	+		PFR28_04613	0.28	+0.1
5,267,180	+		PFR28_04613	0.30	-0.4
5,267,180	+		PFR28_04613	0.30	-0.6
5,267,180	+		PFR28_04613	0.30	-1.9
5,267,181	-		PFR28_04613	0.30	-1.9
5,267,181	-		PFR28_04613	0.30	-1.0
5,267,181	-		PFR28_04613	0.30	+0.7
5,267,337	+		PFR28_04613	0.53	-0.5
5,267,391	+		PFR28_04613	0.61	+1.6
5,267,391	+		PFR28_04613	0.61	-1.0
5,267,391	+		PFR28_04613	0.61	-1.7
5,267,473	+		PFR28_04613	0.73	-0.7
5,267,473	+		PFR28_04613	0.73	-3.1
5,267,473	+		PFR28_04613	0.73	-0.3
5,267,473	+		PFR28_04613	0.73	-1.9
5,267,473	+		PFR28_04613	0.73	-0.9
5,267,473	+		PFR28_04613	0.73	+1.7
5,267,473	+		PFR28_04613	0.73	+2.3
5,267,473	+		PFR28_04613	0.73	+0.9
5,267,474	-		PFR28_04613	0.74	+0.9
5,267,474	-		PFR28_04613	0.74	-1.1
5,267,474	-		PFR28_04613	0.74	+1.0
5,267,474	-		PFR28_04613	0.74	-0.0
5,267,474	-		PFR28_04613	0.74	+1.4
5,267,474	-		PFR28_04613	0.74	+1.1
5,267,547	+		PFR28_04613	0.84	-0.5
5,267,547	+		PFR28_04613	0.84	-2.2
5,267,548	-		PFR28_04613	0.85	-0.6
5,267,548	-		PFR28_04613	0.85	+0.1
5,267,548	-		PFR28_04613	0.85	+1.9
5,267,548	-		PFR28_04613	0.85	+0.4
5,267,622	-				-0.3
5,267,790	+		PFR28_04614	0.14	-0.9
5,267,790	+		PFR28_04614	0.14	+1.3
5,267,790	+		PFR28_04614	0.14	+0.1
5,267,790	+		PFR28_04614	0.14	-0.2
5,267,790	+		PFR28_04614	0.14	-0.3
5,267,791	-		PFR28_04614	0.14	+0.9
5,267,791	-		PFR28_04614	0.14	+4.7
5,267,791	-		PFR28_04614	0.14	-0.9
5,267,791	-		PFR28_04614	0.14	-3.3
5,267,823	-		PFR28_04614	0.17	-0.9
5,267,835	+		PFR28_04614	0.18	-2.5
5,267,835	+		PFR28_04614	0.18	-3.5
5,267,835	+		PFR28_04614	0.18	-0.1
5,267,836	-		PFR28_04614	0.18	-0.2
5,267,836	-		PFR28_04614	0.18	-0.1
5,267,879	+		PFR28_04614	0.23	-0.2
5,267,879	+		PFR28_04614	0.23	-1.8
5,267,879	+		PFR28_04614	0.23	-1.2
5,267,880	-		PFR28_04614	0.23	+3.0
5,267,880	-		PFR28_04614	0.23	-3.7
5,267,880	-		PFR28_04614	0.23	-0.3
5,267,880	-		PFR28_04614	0.23	-0.3
5,267,880	-		PFR28_04614	0.23	+0.7
5,267,880	-		PFR28_04614	0.23	+0.6
5,267,880	-		PFR28_04614	0.23	+0.9
5,268,064	+		PFR28_04614	0.41	-1.8
5,268,065	-		PFR28_04614	0.41	-1.8
5,268,515	+		PFR28_04614	0.86	+0.5
5,268,515	+		PFR28_04614	0.86	-0.8
5,268,515	+		PFR28_04614	0.86	-1.6
5,268,516	-		PFR28_04614	0.86	-0.1
5,268,516	-		PFR28_04614	0.86	+1.2
5,268,516	-		PFR28_04614	0.86	+1.3
5,268,516	-		PFR28_04614	0.86	+1.1
5,268,516	-		PFR28_04614	0.86	-2.9
5,268,516	-		PFR28_04614	0.86	-1.0
5,268,516	-		PFR28_04614	0.86	-3.2
5,268,516	-		PFR28_04614	0.86	-1.0
5,268,523	+		PFR28_04614	0.87	+1.7
5,268,523	+		PFR28_04614	0.87	-0.2
5,268,575	+				+0.6
5,268,576	-				-0.2
5,268,576	-				+3.0
5,268,628	-				+1.3
5,268,634	+				+0.2
5,268,634	+				+1.3
5,268,634	+				-0.6
5,268,634	+				-1.0
5,268,635	-				+0.4
5,268,635	-				-1.3
5,268,635	-				-4.3
5,268,661	-				-2.5
5,268,717	+				-1.4
5,268,717	+				+0.7
5,268,717	+				-0.8
5,268,718	-				-0.4
5,268,728	+				+1.4
5,268,728	+				-2.5
5,268,729	-				-0.7
5,268,729	-				+1.7
5,268,730	+				+1.4
5,268,730	+				+0.1
5,268,731	-				+2.2
5,268,731	-				+0.1
5,268,731	-				-0.0
5,268,731	-				+2.1
5,268,731	-				-0.0
5,268,740	+				-0.5
5,268,746	+				+1.5
5,268,746	+				+0.5
5,268,747	-				+0.3
5,268,747	-				-0.3
5,268,776	+				+3.3
5,268,859	+				-0.7
5,268,859	+				+1.4
5,268,859	+				-0.2
5,268,860	-				+1.7
5,268,860	-				+0.6
5,268,896	+				+4.0
5,269,281	+				+1.1
5,269,360	+				+1.0
5,269,361	-				-0.5
5,269,412	+		PFR28_04615	0.12	+2.0
5,269,412	+		PFR28_04615	0.12	+0.2
5,269,412	+		PFR28_04615	0.12	+1.7
5,269,413	-		PFR28_04615	0.12	+0.3
5,269,413	-		PFR28_04615	0.12	-1.6
5,269,413	-		PFR28_04615	0.12	+0.9
5,269,413	-		PFR28_04615	0.12	+3.2
5,269,413	-		PFR28_04615	0.12	+2.0
5,269,413	-		PFR28_04615	0.12	+0.1
5,269,413	-		PFR28_04615	0.12	+1.1
5,269,413	-		PFR28_04615	0.12	+1.0
5,269,413	-		PFR28_04615	0.12	+2.3
5,269,413	-		PFR28_04615	0.12	-1.8
5,269,440	+		PFR28_04615	0.13	+1.2
5,269,440	+		PFR28_04615	0.13	-1.6
5,269,441	-		PFR28_04615	0.13	-0.0
5,269,497	+		PFR28_04615	0.17	+3.1
5,269,497	+		PFR28_04615	0.17	-2.4
5,269,497	+		PFR28_04615	0.17	+1.0
5,269,498	-		PFR28_04615	0.17	+2.2
5,269,498	-		PFR28_04615	0.17	+2.5
5,269,608	+		PFR28_04615	0.23	+0.7
5,269,608	+		PFR28_04615	0.23	+1.6
5,269,609	-		PFR28_04615	0.23	-1.1
5,269,609	-		PFR28_04615	0.23	-0.6
5,269,609	-		PFR28_04615	0.23	-2.1
5,269,609	-		PFR28_04615	0.23	-0.9
5,269,609	-		PFR28_04615	0.23	+2.4
5,269,609	-		PFR28_04615	0.23	+1.4
5,269,609	-		PFR28_04615	0.23	+2.2
5,269,609	-		PFR28_04615	0.23	-1.0