Strain Fitness in Pseudomonas sp. RS175 around PFR28_03973

Experiment: Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
4,555,827	+		PFR28_03971	0.47	-1.0
4,555,827	+		PFR28_03971	0.47	+0.8
4,555,827	+		PFR28_03971	0.47	-0.3
4,555,827	+		PFR28_03971	0.47	-0.4
4,555,827	+		PFR28_03971	0.47	+1.5
4,555,827	+		PFR28_03971	0.47	+0.5
4,555,827	+		PFR28_03971	0.47	-0.9
4,555,827	+		PFR28_03971	0.47	-2.2
4,555,827	+		PFR28_03971	0.47	-1.3
4,555,827	+		PFR28_03971	0.47	+0.5
4,555,827	+		PFR28_03971	0.47	-1.1
4,555,827	+		PFR28_03971	0.47	-0.3
4,555,827	+		PFR28_03971	0.47	-1.7
4,555,828	-		PFR28_03971	0.47	+1.4
4,555,828	-		PFR28_03971	0.47	-1.2
4,555,828	-		PFR28_03971	0.47	-0.1
4,555,828	-		PFR28_03971	0.47	+1.7
4,555,828	-		PFR28_03971	0.47	-0.8
4,555,828	-		PFR28_03971	0.47	+1.1
4,555,828	-		PFR28_03971	0.47	+0.1
4,555,828	-		PFR28_03971	0.47	+0.6
4,555,828	-		PFR28_03971	0.47	+0.3
4,555,828	-		PFR28_03971	0.47	+1.4
4,555,828	-		PFR28_03971	0.47	+0.9
4,555,828	-		PFR28_03971	0.47	-1.4
4,555,828	-		PFR28_03971	0.47	+1.2
4,555,828	-		PFR28_03971	0.47	-1.1
4,555,828	-		PFR28_03971	0.47	+1.3
4,555,828	-		PFR28_03971	0.47	-1.5
4,555,828	-		PFR28_03971	0.47	-0.2
4,555,828	-		PFR28_03971	0.47	-1.1
4,555,916	+		PFR28_03971	0.63	-0.5
4,555,916	+		PFR28_03971	0.63	+0.1
4,555,916	+		PFR28_03971	0.63	-1.2
4,555,916	+		PFR28_03971	0.63	-1.1
4,555,916	+		PFR28_03971	0.63	-0.1
4,555,916	+		PFR28_03971	0.63	-0.2
4,555,916	+		PFR28_03971	0.63	+0.8
4,555,916	+		PFR28_03971	0.63	-1.1
4,555,916	+		PFR28_03971	0.63	+0.7
4,555,916	+		PFR28_03971	0.63	-2.8
4,555,916	+		PFR28_03971	0.63	-2.1
4,555,917	-		PFR28_03971	0.63	+0.5
4,555,917	-		PFR28_03971	0.63	-0.6
4,555,917	-		PFR28_03971	0.63	-1.6
4,555,917	-		PFR28_03971	0.63	+0.3
4,555,917	-		PFR28_03971	0.63	-1.5
4,555,917	-		PFR28_03971	0.63	-0.8
4,555,917	-		PFR28_03971	0.63	+0.2
4,555,917	-		PFR28_03971	0.63	-0.8
4,555,917	-		PFR28_03971	0.63	+0.5
4,555,917	-		PFR28_03971	0.63	-1.2
4,555,917	-		PFR28_03971	0.63	-1.8
4,555,917	-		PFR28_03971	0.63	-2.2
4,555,917	-		PFR28_03971	0.63	+0.1
4,555,960	-		PFR28_03971	0.71	-0.1
4,556,090	+				+2.3
4,556,104	+				-1.3
4,556,201	+				-1.2
4,556,201	+				-0.5
4,556,201	+				-2.2
4,556,201	+				-1.1
4,556,202	-				+1.0
4,556,202	-				-0.0
4,556,202	-				-2.2
4,556,806	-				-1.3
4,556,808	-				-2.4
4,556,808	-				-1.6
4,556,808	-				-1.1
4,556,808	-				-1.5
4,556,808	-				-2.4
4,556,931	-		PFR28_03973	0.15	-0.6
4,556,931	-		PFR28_03973	0.15	-0.3
4,556,931	-		PFR28_03973	0.15	-0.9
4,556,931	-		PFR28_03973	0.15	-3.8
4,556,931	-		PFR28_03973	0.15	-3.6
4,556,931	-		PFR28_03973	0.15	-3.0
4,556,931	-		PFR28_03973	0.15	-1.0
4,556,931	-		PFR28_03973	0.15	-0.4
4,556,931	-		PFR28_03973	0.15	-1.8
4,556,931	-		PFR28_03973	0.15	-0.2
4,556,950	-		PFR28_03973	0.16	+1.0
4,556,998	+		PFR28_03973	0.20	-1.5
4,556,998	+		PFR28_03973	0.20	-1.3
4,556,998	+		PFR28_03973	0.20	-2.1
4,556,998	+		PFR28_03973	0.20	-3.2
4,556,999	-		PFR28_03973	0.20	-0.9
4,556,999	-		PFR28_03973	0.20	-2.3
4,556,999	-		PFR28_03973	0.20	-2.6
4,556,999	-		PFR28_03973	0.20	-0.1
4,556,999	-		PFR28_03973	0.20	-1.1
4,556,999	-		PFR28_03973	0.20	-1.9
4,557,080	+		PFR28_03973	0.26	-0.9
4,557,229	+		PFR28_03973	0.36	-3.0
4,557,230	-		PFR28_03973	0.36	-2.0
4,557,299	+		PFR28_03973	0.41	-1.9
4,557,299	+		PFR28_03973	0.41	-1.6
4,557,299	+		PFR28_03973	0.41	-0.6
4,557,299	+		PFR28_03973	0.41	+0.7
4,557,300	-		PFR28_03973	0.41	-0.2
4,557,300	-		PFR28_03973	0.41	-1.6
4,557,350	+		PFR28_03973	0.45	-1.6
4,557,351	-		PFR28_03973	0.45	-0.9
4,557,866	+		PFR28_03973	0.82	-1.6
4,557,866	+		PFR28_03973	0.82	-1.1
4,557,867	-		PFR28_03973	0.82	-1.9
4,557,941	+		PFR28_03973	0.87	-1.3
4,557,998	+				+1.7
4,557,998	+				-0.9
4,557,998	+				-0.9
4,557,998	+				-2.4
4,557,999	-				+0.1
4,558,038	+				-0.9
4,558,038	+				-2.5
4,558,152	-				-0.5
4,558,175	+				-0.1
4,558,175	+				-0.2
4,558,175	+				-1.6
4,558,176	-				-3.3
4,558,177	+				-2.5
4,558,208	+				+0.4
4,558,208	+				-0.8
4,558,208	+				+1.0
4,558,209	-				+0.1
4,558,209	-				-1.6
4,558,209	-				-3.3
4,558,209	-				+1.8
4,558,209	-				-0.9
4,558,209	-				-2.3
4,558,209	-				-0.5
4,558,209	-				-1.5
4,558,258	+				-3.4
4,558,258	+				-0.0
4,558,258	+				-1.8
4,558,258	+				-1.1
4,558,260	+				+0.9
4,558,260	+				-0.7
4,558,260	+				+1.8
4,558,260	+				+0.6
4,558,260	+				+1.1
4,558,260	+				-2.2
4,558,260	+				+1.4
4,558,260	+				-0.7
4,558,260	+				-1.7
4,558,260	+				-1.2
4,558,260	+				+0.9
4,558,260	+				-1.8
4,558,260	+				+1.7
4,558,260	+				-0.8
4,558,260	+				-1.2
4,558,260	+				-0.1
4,558,260	+				+1.1
4,558,260	+				-3.0
4,558,260	+				+1.3
4,558,260	+				-1.5
4,558,260	+				-0.9
4,558,260	+				-1.6
4,558,261	-				+1.4
4,558,261	-				-0.9
4,558,261	-				-0.4
4,558,261	-				-3.0
4,558,261	-				+0.4
4,558,261	-				+1.1
4,558,261	-				+0.8
4,558,261	-				+0.7
4,558,261	-				+1.4
4,558,261	-				+0.3
4,558,261	-				+0.9
4,558,261	-				+0.2
4,558,261	-				-1.6
4,558,261	-				-0.5
4,558,261	-				-1.1
4,558,261	-				+0.3
4,558,261	-				+1.1
4,558,261	-				-0.1
4,558,261	-				+0.5
4,558,261	-				+0.1
4,558,261	-				+1.3
4,558,261	-				-0.9
4,558,261	-				+0.7
4,558,261	-				+0.6
4,558,261	-				-1.2
4,558,266	+				+0.6
4,558,267	-				-0.9
4,558,267	-				-3.6
4,558,370	-				-0.6
4,558,454	+				+0.2
4,558,454	+				+2.1
4,558,454	+				-0.1
4,558,454	+				-0.3
4,558,454	+				+1.4
4,558,455	-				-2.3
4,558,455	-				+1.0
4,558,455	-				-0.8
4,558,455	-				+0.3
4,558,455	-				-0.7
4,558,455	-				-2.0
4,558,455	-				-1.9
4,558,610	+		PFR28_03974	0.11	+0.9
4,558,610	+		PFR28_03974	0.11	+0.8
4,558,611	-		PFR28_03974	0.11	-1.6
4,558,611	-		PFR28_03974	0.11	+0.4
4,558,616	+		PFR28_03974	0.11	+2.1
4,558,616	+		PFR28_03974	0.11	+2.0
4,558,617	-		PFR28_03974	0.11	-0.1
4,558,617	-		PFR28_03974	0.11	-0.3