Strain Fitness in Pseudomonas sp. RS175 around PFR28_03688

Experiment: Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
4,253,066	+		PFR28_03686	0.83	-4.1
4,253,066	+		PFR28_03686	0.83	-0.2
4,253,066	+		PFR28_03686	0.83	-2.0
4,253,066	+		PFR28_03686	0.83	-2.0
4,253,066	+		PFR28_03686	0.83	-1.8
4,253,066	+		PFR28_03686	0.83	+1.6
4,253,066	+		PFR28_03686	0.83	-1.5
4,253,066	+		PFR28_03686	0.83	-0.4
4,253,066	+		PFR28_03686	0.83	-0.2
4,253,066	+		PFR28_03686	0.83	-1.1
4,253,066	+		PFR28_03686	0.83	-2.6
4,253,066	+		PFR28_03686	0.83	-0.8
4,253,066	+		PFR28_03686	0.83	-3.2
4,253,066	+		PFR28_03686	0.83	+3.2
4,253,066	+		PFR28_03686	0.83	+1.6
4,253,066	+		PFR28_03686	0.83	-0.6
4,253,066	+		PFR28_03686	0.83	-1.4
4,253,066	+		PFR28_03686	0.83	+1.4
4,253,066	+		PFR28_03686	0.83	-0.1
4,253,066	+		PFR28_03686	0.83	-1.7
4,253,067	-		PFR28_03686	0.83	+0.4
4,253,067	-		PFR28_03686	0.83	+0.7
4,253,067	-		PFR28_03686	0.83	-0.8
4,253,067	-		PFR28_03686	0.83	-1.0
4,253,067	-		PFR28_03686	0.83	+0.0
4,253,067	-		PFR28_03686	0.83	-1.4
4,253,067	-		PFR28_03686	0.83	+1.0
4,253,067	-		PFR28_03686	0.83	-3.2
4,253,067	-		PFR28_03686	0.83	-1.1
4,253,067	-		PFR28_03686	0.83	-0.1
4,253,067	-		PFR28_03686	0.83	+0.2
4,253,067	-		PFR28_03686	0.83	-0.1
4,253,067	-		PFR28_03686	0.83	-1.4
4,253,067	-		PFR28_03686	0.83	-0.7
4,253,067	-		PFR28_03686	0.83	-0.8
4,253,067	-		PFR28_03686	0.83	-1.1
4,253,067	-		PFR28_03686	0.83	-1.7
4,253,067	-		PFR28_03686	0.83	+0.5
4,253,067	-		PFR28_03686	0.83	-0.8
4,253,067	-		PFR28_03686	0.83	-3.5
4,253,067	-		PFR28_03686	0.83	-2.3
4,253,070	+		PFR28_03686	0.84	-2.1
4,253,070	+		PFR28_03686	0.84	-3.2
4,253,070	+		PFR28_03686	0.84	+0.6
4,253,070	+		PFR28_03686	0.84	-2.8
4,253,070	+		PFR28_03686	0.84	-1.1
4,253,071	-		PFR28_03686	0.84	-1.0
4,253,071	-		PFR28_03686	0.84	-1.6
4,253,071	-		PFR28_03686	0.84	+2.6
4,253,071	-		PFR28_03686	0.84	-0.5
4,253,156	+		PFR28_03686	0.87	-0.5
4,253,156	+		PFR28_03686	0.87	-2.2
4,253,156	+		PFR28_03686	0.87	-1.2
4,253,156	+		PFR28_03686	0.87	-1.8
4,253,156	+		PFR28_03686	0.87	-1.0
4,253,157	-		PFR28_03686	0.87	-3.1
4,253,253	+				-0.6
4,253,253	+				-0.4
4,253,254	-				-2.3
4,253,262	-				-0.1
4,253,262	-				-0.9
4,253,337	+				-1.4
4,253,337	+				+0.6
4,253,337	+				-0.3
4,253,337	+				-0.9
4,253,337	+				+2.0
4,253,338	-				-1.5
4,253,338	-				-0.2
4,253,338	-				-0.9
4,253,338	-				-1.2
4,253,338	-				+0.1
4,253,338	-				-1.2
4,253,338	-				-3.1
4,253,338	-				-3.5
4,253,338	-				+0.1
4,253,339	+				-0.8
4,253,339	+				-0.9
4,253,339	+				-4.6
4,253,339	+				-3.3
4,253,339	+				-4.4
4,253,339	+				-1.0
4,253,340	-				+0.3
4,253,340	-				-0.3
4,253,340	-				-0.5
4,253,340	-				-2.5
4,253,340	-				-3.5
4,253,340	-				-2.5
4,253,340	-				+0.7
4,253,340	-				+1.4
4,253,340	-				-2.6
4,253,340	-				-1.0
4,253,434	-				-3.5
4,253,498	+				-1.0
4,253,499	-				-1.7
4,253,609	+		PFR28_03687	0.27	-2.5
4,253,610	-		PFR28_03687	0.27	-1.8
4,253,610	-		PFR28_03687	0.27	-1.2
4,253,617	+		PFR28_03687	0.28	-0.8
4,253,658	+		PFR28_03687	0.35	-1.1
4,253,659	-		PFR28_03687	0.35	-1.1
4,253,659	-		PFR28_03687	0.35	-0.4
4,253,662	+		PFR28_03687	0.35	+0.1
4,253,662	+		PFR28_03687	0.35	-2.7
4,253,662	+		PFR28_03687	0.35	-1.4
4,253,662	+		PFR28_03687	0.35	-0.2
4,253,662	+		PFR28_03687	0.35	+1.6
4,253,662	+		PFR28_03687	0.35	-2.8
4,253,662	+		PFR28_03687	0.35	-0.7
4,253,662	+		PFR28_03687	0.35	-1.0
4,253,662	+		PFR28_03687	0.35	-1.3
4,253,662	+		PFR28_03687	0.35	-0.3
4,253,662	+		PFR28_03687	0.35	+0.5
4,253,663	-		PFR28_03687	0.36	-1.8
4,253,663	-		PFR28_03687	0.36	-1.0
4,253,663	-		PFR28_03687	0.36	-1.9
4,253,663	-		PFR28_03687	0.36	+0.0
4,253,663	-		PFR28_03687	0.36	+1.2
4,253,663	-		PFR28_03687	0.36	-0.7
4,253,663	-		PFR28_03687	0.36	-1.6
4,253,663	-		PFR28_03687	0.36	-0.4
4,253,663	-		PFR28_03687	0.36	-2.4
4,253,702	+		PFR28_03687	0.42	-0.8
4,253,730	-		PFR28_03687	0.46	-1.6
4,253,750	+		PFR28_03687	0.50	-0.3
4,253,750	+		PFR28_03687	0.50	-0.1
4,253,750	+		PFR28_03687	0.50	-0.3
4,253,890	+		PFR28_03687	0.72	+0.8
4,253,890	+		PFR28_03687	0.72	-1.5
4,253,890	+		PFR28_03687	0.72	+0.0
4,253,891	-		PFR28_03687	0.72	+0.5
4,253,891	-		PFR28_03687	0.72	-3.2
4,253,891	-		PFR28_03687	0.72	-1.3
4,253,892	+		PFR28_03687	0.72	-0.1
4,253,892	+		PFR28_03687	0.72	-0.3
4,253,892	+		PFR28_03687	0.72	-1.4
4,253,892	+		PFR28_03687	0.72	-2.0
4,253,892	+		PFR28_03687	0.72	-2.0
4,253,893	-		PFR28_03687	0.72	+0.2
4,253,893	-		PFR28_03687	0.72	-1.4
4,253,893	-		PFR28_03687	0.72	-2.6
4,253,893	-		PFR28_03687	0.72	-3.1
4,253,893	-		PFR28_03687	0.72	-0.7
4,253,893	-		PFR28_03687	0.72	+1.4
4,253,893	-		PFR28_03687	0.72	-1.0
4,253,913	-		PFR28_03687	0.76	-2.6
4,254,081	+				-1.8
4,254,081	+				-0.5
4,254,141	+		PFR28_03688	0.14	+0.4
4,254,141	+		PFR28_03688	0.14	-0.5
4,254,142	-		PFR28_03688	0.14	-0.8
4,254,149	+		PFR28_03688	0.15	-3.0
4,254,150	-		PFR28_03688	0.15	+0.5
4,254,150	-		PFR28_03688	0.15	-1.2
4,254,165	+		PFR28_03688	0.17	-2.2
4,254,166	-		PFR28_03688	0.17	-1.3
4,254,210	+		PFR28_03688	0.24	-1.1
4,254,210	+		PFR28_03688	0.24	-1.0
4,254,210	+		PFR28_03688	0.24	-0.7
4,254,229	+		PFR28_03688	0.27	-0.6
4,254,229	+		PFR28_03688	0.27	-0.1
4,254,230	-		PFR28_03688	0.27	-2.0
4,254,230	-		PFR28_03688	0.27	-1.4
4,254,255	+		PFR28_03688	0.31	-1.0
4,254,255	+		PFR28_03688	0.31	-0.0
4,254,255	+		PFR28_03688	0.31	-3.0
4,254,256	-		PFR28_03688	0.31	-0.8
4,254,265	+		PFR28_03688	0.32	-1.2
4,254,265	+		PFR28_03688	0.32	+0.1
4,254,265	+		PFR28_03688	0.32	-0.5
4,254,265	+		PFR28_03688	0.32	-0.5
4,254,265	+		PFR28_03688	0.32	-2.9
4,254,265	+		PFR28_03688	0.32	+0.4
4,254,266	-		PFR28_03688	0.33	-0.4
4,254,275	-		PFR28_03688	0.34	-0.5
4,254,289	+		PFR28_03688	0.36	-1.9
4,254,289	+		PFR28_03688	0.36	-0.8
4,254,289	+		PFR28_03688	0.36	-2.1
4,254,289	+		PFR28_03688	0.36	-1.0
4,254,290	-		PFR28_03688	0.36	-2.6
4,254,293	+		PFR28_03688	0.37	-1.8
4,254,357	+		PFR28_03688	0.46	-2.8
4,254,357	+		PFR28_03688	0.46	+0.3
4,254,357	+		PFR28_03688	0.46	-0.6
4,254,357	+		PFR28_03688	0.46	+0.4
4,254,357	+		PFR28_03688	0.46	-1.6
4,254,358	-		PFR28_03688	0.47	-3.4
4,254,358	-		PFR28_03688	0.47	-2.9
4,254,358	-		PFR28_03688	0.47	-0.7
4,254,358	-		PFR28_03688	0.47	-2.0
4,254,358	-		PFR28_03688	0.47	-0.9
4,254,358	-		PFR28_03688	0.47	-1.0
4,254,358	-		PFR28_03688	0.47	-0.6
4,254,358	-		PFR28_03688	0.47	-0.5
4,254,467	+		PFR28_03688	0.63	-3.6
4,254,468	-		PFR28_03688	0.63	-1.8
4,254,468	-		PFR28_03688	0.63	-3.3
4,254,468	-		PFR28_03688	0.63	+0.4
4,254,483	+		PFR28_03688	0.65	-1.0
4,254,502	+		PFR28_03688	0.68	-1.2
4,254,502	+		PFR28_03688	0.68	+0.1
4,254,502	+		PFR28_03688	0.68	-1.0
4,254,502	+		PFR28_03688	0.68	-0.5
4,254,502	+		PFR28_03688	0.68	-0.8
4,254,502	+		PFR28_03688	0.68	-3.2
4,254,502	+		PFR28_03688	0.68	-1.8
4,254,502	+		PFR28_03688	0.68	-1.7
4,254,502	+		PFR28_03688	0.68	-1.9
4,254,503	-		PFR28_03688	0.68	-1.4
4,254,503	-		PFR28_03688	0.68	+0.1
4,254,503	-		PFR28_03688	0.68	+1.1
4,254,503	-		PFR28_03688	0.68	-3.4
4,254,503	-		PFR28_03688	0.68	-1.2
4,254,503	-		PFR28_03688	0.68	-0.9
4,254,503	-		PFR28_03688	0.68	-0.4
4,254,565	+		PFR28_03688	0.78	-0.7
4,254,575	-		PFR28_03688	0.79	-4.1
4,254,710	+				-1.6
4,254,710	+				-2.3
4,254,710	+				-2.9
4,254,711	-				-0.3
4,254,711	-				+2.6
4,254,711	-				-0.1
4,254,711	-				-1.4
4,254,711	-				-2.0
4,254,711	-				-2.0
4,254,711	-				+0.3
4,254,729	+				+0.6
4,254,730	-				+1.9
4,254,730	-				+1.3
4,254,740	+				-2.2
4,254,740	+				-0.7
4,254,740	+				+0.8
4,254,740	+				-0.2
4,254,740	+				-3.1
4,254,741	-				-0.2
4,254,741	-				+0.3
4,254,741	-				+0.7
4,254,741	-				+1.9
4,254,745	+				+0.7
4,254,745	+				-0.6
4,254,745	+				-2.3
4,254,746	-				+0.8
4,254,746	-				+0.9
4,254,746	-				+3.2
4,254,746	-				+1.4
4,254,746	-				+0.1
4,254,764	+				+0.0
4,254,765	-				+1.2
4,254,773	-				+1.8