Strain Fitness in Pseudomonas sp. RS175 around PFR28_03643

Experiment: Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03642 and PFR28_03643 are separated by 144 nucleotidesPFR28_03643 and PFR28_03644 are separated by 8 nucleotides PFR28_03642: PFR28_03642 - Uracil permease, at 4,203,882 to 4,205,156 _03642 PFR28_03643: PFR28_03643 - Ferrochelatase, at 4,205,301 to 4,206,326 _03643 PFR28_03644: PFR28_03644 - Epimerase family protein, at 4,206,335 to 4,207,240 _03644 Position (kb) 4205 4206 4207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4204.737 kb on + strand, within PFR28_03642at 4204.737 kb on + strand, within PFR28_03642at 4204.737 kb on + strand, within PFR28_03642at 4204.737 kb on + strand, within PFR28_03642at 4204.737 kb on + strand, within PFR28_03642at 4204.738 kb on - strand, within PFR28_03642at 4204.738 kb on - strand, within PFR28_03642at 4204.738 kb on - strand, within PFR28_03642at 4204.776 kb on + strand, within PFR28_03642at 4204.776 kb on + strand, within PFR28_03642at 4204.776 kb on + strand, within PFR28_03642at 4204.776 kb on + strand, within PFR28_03642at 4204.777 kb on - strand, within PFR28_03642at 4205.188 kb on + strandat 4205.188 kb on + strandat 4205.188 kb on + strandat 4205.311 kb on - strandat 4206.337 kb on - strandat 4206.337 kb on - strandat 4206.337 kb on - strandat 4206.580 kb on + strand, within PFR28_03644at 4206.580 kb on + strand, within PFR28_03644at 4206.580 kb on + strand, within PFR28_03644at 4206.580 kb on + strand, within PFR28_03644at 4206.580 kb on + strand, within PFR28_03644at 4206.580 kb on + strand, within PFR28_03644at 4206.580 kb on + strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.581 kb on - strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.582 kb on + strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.583 kb on - strand, within PFR28_03644at 4206.644 kb on - strand, within PFR28_03644at 4206.710 kb on + strand, within PFR28_03644at 4206.767 kb on + strand, within PFR28_03644at 4206.768 kb on - strand, within PFR28_03644at 4207.123 kb on + strand, within PFR28_03644at 4207.123 kb on + strand, within PFR28_03644at 4207.154 kb on + strandat 4207.154 kb on + strandat 4207.154 kb on + strandat 4207.155 kb on - strandat 4207.155 kb on - strandat 4207.216 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.232 kb on + strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.233 kb on - strandat 4207.264 kb on + strandat 4207.276 kb on + strandat 4207.276 kb on + strandat 4207.277 kb on - strandat 4207.287 kb on + strandat 4207.288 kb on - strandat 4207.288 kb on - strandat 4207.289 kb on + strandat 4207.290 kb on - strandat 4207.290 kb on - strandat 4207.290 kb on - strandat 4207.306 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
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4,204,737 + PFR28_03642 0.67 +0.8
4,204,737 + PFR28_03642 0.67 +2.6
4,204,737 + PFR28_03642 0.67 -1.0
4,204,737 + PFR28_03642 0.67 -0.8
4,204,737 + PFR28_03642 0.67 -1.0
4,204,738 - PFR28_03642 0.67 +1.0
4,204,738 - PFR28_03642 0.67 +1.3
4,204,738 - PFR28_03642 0.67 +0.5
4,204,776 + PFR28_03642 0.70 +0.5
4,204,776 + PFR28_03642 0.70 +0.3
4,204,776 + PFR28_03642 0.70 +1.5
4,204,776 + PFR28_03642 0.70 +1.6
4,204,777 - PFR28_03642 0.70 +0.3
4,205,188 + -0.2
4,205,188 + +0.8
4,205,188 + -0.7
4,205,311 - -0.7
4,206,337 - +0.4
4,206,337 - -1.2
4,206,337 - -2.9
4,206,580 + PFR28_03644 0.27 -1.9
4,206,580 + PFR28_03644 0.27 -1.6
4,206,580 + PFR28_03644 0.27 +1.1
4,206,580 + PFR28_03644 0.27 -0.4
4,206,580 + PFR28_03644 0.27 +0.1
4,206,580 + PFR28_03644 0.27 -0.6
4,206,580 + PFR28_03644 0.27 +0.1
4,206,581 - PFR28_03644 0.27 +0.6
4,206,581 - PFR28_03644 0.27 +0.7
4,206,581 - PFR28_03644 0.27 +2.5
4,206,581 - PFR28_03644 0.27 +0.9
4,206,581 - PFR28_03644 0.27 -0.1
4,206,581 - PFR28_03644 0.27 -2.3
4,206,581 - PFR28_03644 0.27 -0.2
4,206,581 - PFR28_03644 0.27 +0.8
4,206,581 - PFR28_03644 0.27 -3.2
4,206,582 + PFR28_03644 0.27 +0.6
4,206,582 + PFR28_03644 0.27 -0.1
4,206,582 + PFR28_03644 0.27 +0.4
4,206,582 + PFR28_03644 0.27 +0.5
4,206,582 + PFR28_03644 0.27 -2.8
4,206,582 + PFR28_03644 0.27 -1.1
4,206,582 + PFR28_03644 0.27 +0.1
4,206,582 + PFR28_03644 0.27 -2.0
4,206,582 + PFR28_03644 0.27 -0.5
4,206,583 - PFR28_03644 0.27 +2.0
4,206,583 - PFR28_03644 0.27 -2.5
4,206,583 - PFR28_03644 0.27 +0.7
4,206,583 - PFR28_03644 0.27 +1.6
4,206,583 - PFR28_03644 0.27 +1.1
4,206,583 - PFR28_03644 0.27 +0.8
4,206,583 - PFR28_03644 0.27 +0.4
4,206,583 - PFR28_03644 0.27 -0.7
4,206,644 - PFR28_03644 0.34 +1.3
4,206,710 + PFR28_03644 0.41 -0.8
4,206,767 + PFR28_03644 0.48 +2.2
4,206,768 - PFR28_03644 0.48 -1.8
4,207,123 + PFR28_03644 0.87 -0.7
4,207,123 + PFR28_03644 0.87 +1.0
4,207,154 + -4.1
4,207,154 + +2.2
4,207,154 + -1.7
4,207,155 - -2.7
4,207,155 - -0.7
4,207,216 + -0.4
4,207,232 + +1.9
4,207,232 + +0.7
4,207,232 + +0.5
4,207,232 + +0.3
4,207,232 + -0.3
4,207,232 + -2.2
4,207,232 + -2.1
4,207,232 + +0.6
4,207,232 + -1.2
4,207,232 + -1.8
4,207,232 + -2.0
4,207,232 + +0.7
4,207,233 - +0.2
4,207,233 - -2.0
4,207,233 - -0.6
4,207,233 - -1.4
4,207,233 - -2.6
4,207,233 - +1.7
4,207,233 - +1.2
4,207,233 - -2.6
4,207,233 - +2.9
4,207,233 - +0.0
4,207,233 - -0.5
4,207,233 - -0.9
4,207,233 - +0.5
4,207,233 - -0.6
4,207,233 - +2.0
4,207,233 - +1.5
4,207,264 + -0.0
4,207,276 + +2.0
4,207,276 + +0.9
4,207,277 - +0.9
4,207,287 + -1.2
4,207,288 - +0.0
4,207,288 - +1.0
4,207,289 + -0.8
4,207,290 - -1.1
4,207,290 - -1.9
4,207,290 - +0.0
4,207,306 + +0.5

Or see this region's nucleotide sequence