Experiment: Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00538 and PFR28_00539 overlap by 4 nucleotides PFR28_00539 and PFR28_00540 are separated by 342 nucleotides
PFR28_00538: PFR28_00538 - hypothetical protein, at 571,188 to 572,453
_00538
PFR28_00539: PFR28_00539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 572,450 to 573,373
_00539
PFR28_00540: PFR28_00540 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 573,716 to 574,843
_00540
Position (kb) 572
573
574 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 571.660 kb on + strand, within PFR28_00538 at 571.661 kb on - strand, within PFR28_00538 at 571.661 kb on - strand, within PFR28_00538 at 571.690 kb on + strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.993 kb on + strand, within PFR28_00538 at 571.994 kb on - strand, within PFR28_00538 at 571.999 kb on + strand, within PFR28_00538 at 572.000 kb on - strand, within PFR28_00538 at 572.026 kb on + strand, within PFR28_00538 at 572.026 kb on + strand, within PFR28_00538 at 572.027 kb on - strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.299 kb on - strand, within PFR28_00538 at 572.299 kb on - strand, within PFR28_00538 at 572.299 kb on - strand, within PFR28_00538 at 572.438 kb on + strand at 572.439 kb on - strand at 572.439 kb on - strand at 572.439 kb on - strand at 572.443 kb on + strand at 572.443 kb on + strand at 572.444 kb on - strand at 572.444 kb on - strand at 572.444 kb on - strand at 572.453 kb on + strand at 572.454 kb on - strand at 572.454 kb on - strand at 572.454 kb on - strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.557 kb on + strand, within PFR28_00539 at 572.715 kb on - strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.914 kb on - strand, within PFR28_00539 at 572.914 kb on - strand, within PFR28_00539 at 572.914 kb on - strand, within PFR28_00539 at 573.011 kb on + strand, within PFR28_00539 at 573.011 kb on + strand, within PFR28_00539 at 573.011 kb on + strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.029 kb on + strand, within PFR28_00539 at 573.029 kb on + strand, within PFR28_00539 at 573.091 kb on - strand, within PFR28_00539 at 573.106 kb on + strand, within PFR28_00539 at 573.106 kb on + strand, within PFR28_00539 at 573.107 kb on - strand, within PFR28_00539 at 573.111 kb on + strand, within PFR28_00539 at 573.111 kb on + strand, within PFR28_00539 at 573.111 kb on + strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.117 kb on + strand, within PFR28_00539 at 573.117 kb on + strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.222 kb on + strand, within PFR28_00539 at 573.222 kb on + strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.260 kb on - strand, within PFR28_00539 at 573.279 kb on + strand, within PFR28_00539 at 573.279 kb on + strand, within PFR28_00539 at 573.280 kb on - strand, within PFR28_00539 at 573.291 kb on + strand at 573.291 kb on + strand at 573.312 kb on + strand at 573.312 kb on + strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.360 kb on + strand at 573.361 kb on - strand at 573.361 kb on - strand at 573.374 kb on + strand at 573.375 kb on - strand at 573.375 kb on - strand at 573.385 kb on + strand at 573.385 kb on + strand at 573.385 kb on + strand at 573.385 kb on + strand at 573.494 kb on - strand at 573.540 kb on + strand at 573.541 kb on - strand at 573.549 kb on + strand at 573.550 kb on - strand at 573.550 kb on - strand at 573.610 kb on + strand at 573.610 kb on + strand at 573.610 kb on + strand at 573.611 kb on - strand at 573.611 kb on - strand at 573.611 kb on - strand at 573.634 kb on + strand at 573.634 kb on + strand at 573.634 kb on + strand at 573.662 kb on + strand at 573.663 kb on - strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.717 kb on + strand at 573.717 kb on + strand at 573.718 kb on - strand at 573.762 kb on + strand at 573.763 kb on - strand at 573.763 kb on - strand at 574.167 kb on + strand, within PFR28_00540 at 574.167 kb on + strand, within PFR28_00540 at 574.167 kb on + strand, within PFR28_00540 at 574.167 kb on + strand, within PFR28_00540 at 574.168 kb on - strand, within PFR28_00540 at 574.168 kb on - strand, within PFR28_00540 at 574.168 kb on - strand, within PFR28_00540 at 574.171 kb on - strand, within PFR28_00540 at 574.303 kb on + strand, within PFR28_00540 at 574.304 kb on - strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.315 kb on - strand, within PFR28_00540 at 574.315 kb on - strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM remove 571,660 + PFR28_00538 0.37 -3.7 571,661 - PFR28_00538 0.37 -2.8 571,661 - PFR28_00538 0.37 -0.5 571,690 + PFR28_00538 0.40 -1.8 571,691 - PFR28_00538 0.40 -1.8 571,691 - PFR28_00538 0.40 -2.3 571,691 - PFR28_00538 0.40 -0.3 571,691 - PFR28_00538 0.40 +0.6 571,976 - PFR28_00538 0.62 -0.7 571,976 - PFR28_00538 0.62 -0.9 571,976 - PFR28_00538 0.62 -0.2 571,976 - PFR28_00538 0.62 -2.0 571,993 + PFR28_00538 0.64 -4.3 571,994 - PFR28_00538 0.64 -0.0 571,999 + PFR28_00538 0.64 -1.9 572,000 - PFR28_00538 0.64 +0.6 572,026 + PFR28_00538 0.66 -1.2 572,026 + PFR28_00538 0.66 -2.0 572,027 - PFR28_00538 0.66 -0.8 572,089 + PFR28_00538 0.71 -2.1 572,089 + PFR28_00538 0.71 +0.9 572,089 + PFR28_00538 0.71 -0.6 572,089 + PFR28_00538 0.71 -1.0 572,089 + PFR28_00538 0.71 -0.0 572,089 + PFR28_00538 0.71 +0.1 572,089 + PFR28_00538 0.71 +1.4 572,089 + PFR28_00538 0.71 -3.4 572,089 + PFR28_00538 0.71 -1.1 572,089 + PFR28_00538 0.71 -0.1 572,090 - PFR28_00538 0.71 -1.9 572,090 - PFR28_00538 0.71 -1.7 572,090 - PFR28_00538 0.71 +0.5 572,090 - PFR28_00538 0.71 -3.7 572,090 - PFR28_00538 0.71 -1.6 572,090 - PFR28_00538 0.71 +0.1 572,090 - PFR28_00538 0.71 +1.6 572,090 - PFR28_00538 0.71 -1.5 572,090 - PFR28_00538 0.71 -0.2 572,090 - PFR28_00538 0.71 -2.2 572,090 - PFR28_00538 0.71 +1.6 572,090 - PFR28_00538 0.71 +1.1 572,090 - PFR28_00538 0.71 -2.0 572,090 - PFR28_00538 0.71 +1.2 572,090 - PFR28_00538 0.71 -1.6 572,090 - PFR28_00538 0.71 -0.1 572,090 - PFR28_00538 0.71 -2.3 572,090 - PFR28_00538 0.71 +0.9 572,299 - PFR28_00538 0.88 -2.2 572,299 - PFR28_00538 0.88 -4.0 572,299 - PFR28_00538 0.88 -1.0 572,438 + -0.0 572,439 - -0.4 572,439 - -0.6 572,439 - -1.4 572,443 + -2.7 572,443 + -1.4 572,444 - -0.4 572,444 - -2.1 572,444 - -0.5 572,453 + -0.6 572,454 - -4.0 572,454 - -1.2 572,454 - -0.6 572,541 + +1.6 572,541 + -1.4 572,541 + -1.9 572,541 + -3.8 572,541 + -0.6 572,541 + -2.7 572,542 - -0.4 572,542 - -2.2 572,542 - -0.6 572,542 - -0.4 572,542 - -2.0 572,557 + PFR28_00539 0.12 +0.3 572,715 - PFR28_00539 0.29 -0.9 572,913 + PFR28_00539 0.50 -1.4 572,913 + PFR28_00539 0.50 -0.9 572,913 + PFR28_00539 0.50 -0.5 572,913 + PFR28_00539 0.50 -1.5 572,913 + PFR28_00539 0.50 -2.4 572,913 + PFR28_00539 0.50 -1.5 572,913 + PFR28_00539 0.50 -1.6 572,913 + PFR28_00539 0.50 +0.5 572,913 + PFR28_00539 0.50 -3.2 572,913 + PFR28_00539 0.50 -5.4 572,913 + PFR28_00539 0.50 -2.4 572,914 - PFR28_00539 0.50 +0.2 572,914 - PFR28_00539 0.50 -1.0 572,914 - PFR28_00539 0.50 -0.7 573,011 + PFR28_00539 0.61 -0.3 573,011 + PFR28_00539 0.61 -1.6 573,011 + PFR28_00539 0.61 +0.2 573,012 - PFR28_00539 0.61 -2.7 573,012 - PFR28_00539 0.61 -1.2 573,012 - PFR28_00539 0.61 -2.9 573,012 - PFR28_00539 0.61 -0.1 573,029 + PFR28_00539 0.63 +0.9 573,029 + PFR28_00539 0.63 -2.1 573,091 - PFR28_00539 0.69 -2.6 573,106 + PFR28_00539 0.71 -4.4 573,106 + PFR28_00539 0.71 -2.0 573,107 - PFR28_00539 0.71 -0.7 573,111 + PFR28_00539 0.72 -3.0 573,111 + PFR28_00539 0.72 +1.1 573,111 + PFR28_00539 0.72 -2.4 573,112 - PFR28_00539 0.72 -2.1 573,112 - PFR28_00539 0.72 -0.6 573,112 - PFR28_00539 0.72 -1.4 573,112 - PFR28_00539 0.72 -0.4 573,117 + PFR28_00539 0.72 -0.4 573,117 + PFR28_00539 0.72 -0.2 573,118 - PFR28_00539 0.72 -2.4 573,118 - PFR28_00539 0.72 -2.3 573,118 - PFR28_00539 0.72 +0.1 573,118 - PFR28_00539 0.72 -2.9 573,222 + PFR28_00539 0.84 +1.3 573,222 + PFR28_00539 0.84 -3.2 573,223 - PFR28_00539 0.84 -2.2 573,223 - PFR28_00539 0.84 -0.8 573,223 - PFR28_00539 0.84 +2.2 573,223 - PFR28_00539 0.84 -1.7 573,237 + PFR28_00539 0.85 -3.1 573,237 + PFR28_00539 0.85 -2.7 573,237 + PFR28_00539 0.85 -1.7 573,237 + PFR28_00539 0.85 -2.5 573,237 + PFR28_00539 0.85 -0.7 573,237 + PFR28_00539 0.85 -2.3 573,238 - PFR28_00539 0.85 +0.5 573,238 - PFR28_00539 0.85 -1.7 573,238 - PFR28_00539 0.85 -0.2 573,238 - PFR28_00539 0.85 +1.0 573,238 - PFR28_00539 0.85 +1.1 573,238 - PFR28_00539 0.85 -0.4 573,238 - PFR28_00539 0.85 -2.9 573,260 - PFR28_00539 0.88 -1.3 573,279 + PFR28_00539 0.90 +0.4 573,279 + PFR28_00539 0.90 +0.5 573,280 - PFR28_00539 0.90 +1.3 573,291 + -1.9 573,291 + -1.9 573,312 + -0.7 573,312 + +0.6 573,313 - -2.2 573,313 - +1.4 573,313 - +0.3 573,313 - -3.3 573,313 - -3.9 573,313 - -0.1 573,360 + +0.7 573,361 - -1.4 573,361 - -1.3 573,374 + -3.8 573,375 - +0.7 573,375 - -3.1 573,385 + -1.0 573,385 + -1.5 573,385 + -0.6 573,385 + -1.5 573,494 - -0.5 573,540 + -1.4 573,541 - +1.6 573,549 + -2.6 573,550 - -0.2 573,550 - -2.3 573,610 + -2.5 573,610 + +0.4 573,610 + -2.3 573,611 - +0.5 573,611 - -2.7 573,611 - -0.6 573,634 + -1.6 573,634 + -0.6 573,634 + -0.0 573,662 + -1.8 573,663 - -0.1 573,687 + -3.9 573,687 + +0.3 573,687 + -1.6 573,687 + -1.8 573,687 + -3.3 573,687 + -1.7 573,687 + +0.1 573,687 + -0.4 573,687 + -1.2 573,687 + -1.2 573,688 - +0.3 573,688 - -0.2 573,688 - -0.0 573,688 - +0.7 573,688 - +0.2 573,688 - -0.6 573,688 - -1.7 573,688 - +0.9 573,688 - -2.5 573,688 - -0.1 573,688 - +1.0 573,717 + +1.9 573,717 + -1.5 573,718 - -0.5 573,762 + +0.7 573,763 - -0.0 573,763 - +0.7 574,167 + PFR28_00540 0.40 -2.1 574,167 + PFR28_00540 0.40 -2.5 574,167 + PFR28_00540 0.40 -3.8 574,167 + PFR28_00540 0.40 -0.7 574,168 - PFR28_00540 0.40 -0.9 574,168 - PFR28_00540 0.40 -1.8 574,168 - PFR28_00540 0.40 -1.7 574,171 - PFR28_00540 0.40 -0.2 574,303 + PFR28_00540 0.52 -2.2 574,304 - PFR28_00540 0.52 -0.5 574,314 + PFR28_00540 0.53 -2.6 574,314 + PFR28_00540 0.53 -4.1 574,314 + PFR28_00540 0.53 -2.0 574,314 + PFR28_00540 0.53 -2.1 574,315 - PFR28_00540 0.53 -1.8 574,315 - PFR28_00540 0.53 -1.2 574,371 + PFR28_00540 0.58 -4.4 574,371 + PFR28_00540 0.58 -0.8 574,371 + PFR28_00540 0.58 +0.1 574,371 + PFR28_00540 0.58 -2.4 574,371 + PFR28_00540 0.58 -0.2 574,371 + PFR28_00540 0.58 -4.0 574,371 + PFR28_00540 0.58 -3.9 574,372 - PFR28_00540 0.58 -0.0 574,372 - PFR28_00540 0.58 -0.2 574,372 - PFR28_00540 0.58 -0.0 574,372 - PFR28_00540 0.58 -0.0 574,372 - PFR28_00540 0.58 -0.1 574,372 - PFR28_00540 0.58 +0.2
Or see this region's nucleotide sequence