Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF772

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF770 and GFF771 are separated by 6 nucleotidesGFF771 and GFF772 are separated by 17 nucleotidesGFF772 and GFF773 are separated by 229 nucleotidesGFF773 and GFF774 are separated by 95 nucleotides GFF770 - Arginine ABC transporter, permease protein ArtQ, at 126,635 to 127,351 GFF770 GFF771 - Arginine ABC transporter, periplasmic arginine-binding protein ArtI, at 127,358 to 128,089 GFF771 GFF772 - Arginine ABC transporter, ATP-binding protein ArtP, at 128,107 to 128,835 GFF772 GFF773 - probable lipoprotein, at 129,065 to 129,580 GFF773 GFF774 - putative integrase, at 129,676 to 130,974 GFF774 Position (kb) 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 127.215 kb on - strand, within GFF770at 127.269 kb on - strand, within GFF770at 127.360 kb on - strandat 127.379 kb on - strandat 127.464 kb on - strand, within GFF771at 127.511 kb on - strand, within GFF771at 127.511 kb on - strand, within GFF771at 127.531 kb on + strand, within GFF771at 127.698 kb on - strand, within GFF771at 127.737 kb on + strand, within GFF771at 127.925 kb on - strand, within GFF771at 127.972 kb on + strand, within GFF771at 127.973 kb on - strand, within GFF771at 127.973 kb on - strand, within GFF771at 128.562 kb on + strand, within GFF772at 128.565 kb on - strand, within GFF772at 128.565 kb on - strand, within GFF772at 128.596 kb on + strand, within GFF772at 128.597 kb on - strand, within GFF772at 128.845 kb on + strandat 128.846 kb on - strandat 128.865 kb on + strandat 128.865 kb on + strandat 128.866 kb on - strandat 128.866 kb on - strandat 128.880 kb on + strandat 128.955 kb on + strandat 128.981 kb on - strandat 129.169 kb on + strand, within GFF773at 129.569 kb on - strandat 129.569 kb on - strandat 129.593 kb on - strandat 129.594 kb on + strandat 129.597 kb on - strandat 129.619 kb on - strandat 129.724 kb on - strandat 129.746 kb on - strandat 129.751 kb on + strandat 129.752 kb on - strandat 129.752 kb on - strandat 129.752 kb on - strandat 129.790 kb on + strandat 129.795 kb on + strandat 129.796 kb on - strandat 129.796 kb on - strandat 129.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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127,215 - GFF770 0.81 +0.1
127,269 - GFF770 0.88 -0.1
127,360 - -0.5
127,379 - +3.2
127,464 - GFF771 0.14 +0.5
127,511 - GFF771 0.21 -0.7
127,511 - GFF771 0.21 -0.2
127,531 + GFF771 0.24 -0.2
127,698 - GFF771 0.46 +0.1
127,737 + GFF771 0.52 -0.5
127,925 - GFF771 0.77 -0.8
127,972 + GFF771 0.84 -0.8
127,973 - GFF771 0.84 +0.0
127,973 - GFF771 0.84 +0.5
128,562 + GFF772 0.62 -0.7
128,565 - GFF772 0.63 -0.4
128,565 - GFF772 0.63 -1.2
128,596 + GFF772 0.67 -0.1
128,597 - GFF772 0.67 -0.9
128,845 + -0.0
128,846 - +0.3
128,865 + -0.6
128,865 + -0.3
128,866 - -0.9
128,866 - +0.2
128,880 + -0.7
128,955 + -0.0
128,981 - -0.2
129,169 + GFF773 0.20 -0.5
129,569 - +0.2
129,569 - +0.1
129,593 - -0.6
129,594 + -1.0
129,597 - -0.7
129,619 - +0.3
129,724 - -0.0
129,746 - +0.4
129,751 + +0.5
129,752 - -1.8
129,752 - +0.1
129,752 - +0.6
129,790 + -0.4
129,795 + -0.5
129,796 - -0.1
129,796 - +0.5
129,796 - +0.2

Or see this region's nucleotide sequence