Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4921

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4919 and GFF4920 are separated by 70 nucleotidesGFF4920 and GFF4921 overlap by 1 nucleotides GFF4919 - Sialidase (EC 3.2.1.18), at 21,840 to 22,988 GFF4919 GFF4920 - Phage tail fibers, at 23,059 to 23,634 GFF4920 GFF4921 - Phage tail fiber protein, at 23,634 to 24,959 GFF4921 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1 2at 22.712 kb on + strand, within GFF4919at 22.772 kb on + strand, within GFF4919at 22.775 kb on - strand, within GFF4919at 22.830 kb on + strand, within GFF4919at 23.378 kb on + strand, within GFF4920at 23.379 kb on - strand, within GFF4920at 23.379 kb on - strand, within GFF4920at 23.379 kb on - strand, within GFF4920at 23.406 kb on - strand, within GFF4920at 23.502 kb on + strand, within GFF4920at 23.543 kb on + strand, within GFF4920at 23.544 kb on - strand, within GFF4920at 23.575 kb on - strand, within GFF4920at 23.855 kb on + strand, within GFF4921at 23.876 kb on + strand, within GFF4921at 23.891 kb on + strand, within GFF4921at 24.218 kb on - strand, within GFF4921at 24.275 kb on - strand, within GFF4921at 24.486 kb on - strand, within GFF4921at 24.641 kb on + strand, within GFF4921at 24.835 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
remove
22,712 + GFF4919 0.76 +2.0
22,772 + GFF4919 0.81 +0.4
22,775 - GFF4919 0.81 +0.0
22,830 + GFF4919 0.86 +0.1
23,378 + GFF4920 0.55 +0.9
23,379 - GFF4920 0.56 -0.2
23,379 - GFF4920 0.56 -0.4
23,379 - GFF4920 0.56 +1.4
23,406 - GFF4920 0.60 -0.2
23,502 + GFF4920 0.77 +0.8
23,543 + GFF4920 0.84 -0.7
23,544 - GFF4920 0.84 -0.6
23,575 - GFF4920 0.90 +0.6
23,855 + GFF4921 0.17 +0.4
23,876 + GFF4921 0.18 +0.1
23,891 + GFF4921 0.19 +0.4
24,218 - GFF4921 0.44 +0.7
24,275 - GFF4921 0.48 +0.3
24,486 - GFF4921 0.64 +2.0
24,641 + GFF4921 0.76 +1.1
24,835 - -0.1

Or see this region's nucleotide sequence