Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4544

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4543 and GFF4544 are separated by 99 nucleotidesGFF4544 and GFF4545 are separated by 108 nucleotides GFF4543 - Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase, at 327,502 to 328,143 GFF4543 GFF4544 - Proposed lipoate regulatory protein YbeD, at 328,243 to 328,506 GFF4544 GFF4545 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 328,615 to 329,826 GFF4545 Position (kb) 328 329Strain fitness (log2 ratio) -1 0 1 2 3at 328.154 kb on - strandat 328.183 kb on - strandat 328.183 kb on - strandat 328.185 kb on - strandat 328.244 kb on + strandat 328.245 kb on - strandat 328.245 kb on - strandat 328.522 kb on - strandat 328.574 kb on - strandat 328.577 kb on - strandat 328.577 kb on - strandat 328.578 kb on + strandat 328.579 kb on - strandat 328.802 kb on - strand, within GFF4545at 328.805 kb on + strand, within GFF4545at 328.805 kb on + strand, within GFF4545at 329.005 kb on - strand, within GFF4545at 329.007 kb on - strand, within GFF4545at 329.291 kb on - strand, within GFF4545at 329.333 kb on + strand, within GFF4545at 329.333 kb on + strand, within GFF4545at 329.333 kb on + strand, within GFF4545at 329.334 kb on - strand, within GFF4545at 329.334 kb on - strand, within GFF4545at 329.334 kb on - strand, within GFF4545at 329.334 kb on - strand, within GFF4545at 329.334 kb on - strand, within GFF4545at 329.491 kb on - strand, within GFF4545

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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328,154 - +0.7
328,183 - +0.7
328,183 - +0.1
328,185 - -0.1
328,244 + +0.8
328,245 - +0.2
328,245 - +0.1
328,522 - +0.5
328,574 - -0.4
328,577 - +0.4
328,577 - -0.1
328,578 + +0.3
328,579 - +0.6
328,802 - GFF4545 0.15 +0.3
328,805 + GFF4545 0.16 +1.0
328,805 + GFF4545 0.16 +0.8
329,005 - GFF4545 0.32 +1.5
329,007 - GFF4545 0.32 +0.9
329,291 - GFF4545 0.56 +0.0
329,333 + GFF4545 0.59 +1.2
329,333 + GFF4545 0.59 -0.6
329,333 + GFF4545 0.59 +3.3
329,334 - GFF4545 0.59 -0.1
329,334 - GFF4545 0.59 +1.3
329,334 - GFF4545 0.59 +0.4
329,334 - GFF4545 0.59 +0.4
329,334 - GFF4545 0.59 +0.5
329,491 - GFF4545 0.72 -0.6

Or see this region's nucleotide sequence