Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4258 and GFF4259 are separated by 40 nucleotides GFF4259 and GFF4260 are separated by 231 nucleotides GFF4260 and GFF4261 are separated by 135 nucleotides
GFF4258 - Ferrichrome-iron receptor, at 42,893 to 44,983
GFF4258
GFF4259 - Threonine efflux protein, at 45,024 to 45,656
GFF4259
GFF4260 - FIG00639237: hypothetical protein, at 45,888 to 46,163
GFF4260
GFF4261 - Propionate catabolism operon regulatory protein PrpR, at 46,299 to 47,924
GFF4261
Position (kb) 45
46 Strain fitness (log2 ratio) -1
0
1 at 44.024 kb on - strand, within GFF4258 at 44.073 kb on - strand, within GFF4258 at 44.095 kb on + strand, within GFF4258 at 44.096 kb on - strand, within GFF4258 at 44.103 kb on - strand, within GFF4258 at 44.103 kb on - strand, within GFF4258 at 44.104 kb on + strand, within GFF4258 at 44.141 kb on + strand, within GFF4258 at 44.142 kb on - strand, within GFF4258 at 44.179 kb on + strand, within GFF4258 at 44.465 kb on - strand, within GFF4258 at 44.501 kb on - strand, within GFF4258 at 44.536 kb on + strand, within GFF4258 at 44.536 kb on + strand, within GFF4258 at 44.598 kb on - strand, within GFF4258 at 44.600 kb on - strand, within GFF4258 at 44.603 kb on + strand, within GFF4258 at 44.603 kb on + strand, within GFF4258 at 44.603 kb on + strand, within GFF4258 at 44.603 kb on + strand, within GFF4258 at 44.603 kb on + strand, within GFF4258 at 44.604 kb on - strand, within GFF4258 at 44.605 kb on + strand, within GFF4258 at 44.605 kb on + strand, within GFF4258 at 44.618 kb on + strand, within GFF4258 at 44.696 kb on + strand, within GFF4258 at 44.783 kb on - strand at 44.801 kb on + strand at 44.801 kb on + strand at 44.802 kb on - strand at 44.803 kb on + strand at 44.804 kb on - strand at 44.804 kb on - strand at 44.823 kb on + strand at 44.829 kb on - strand at 44.850 kb on + strand at 44.927 kb on + strand at 44.928 kb on - strand at 44.928 kb on - strand at 44.958 kb on + strand at 44.985 kb on - strand at 45.047 kb on - strand at 45.237 kb on - strand, within GFF4259 at 45.405 kb on + strand, within GFF4259 at 45.406 kb on - strand, within GFF4259 at 45.409 kb on + strand, within GFF4259 at 45.409 kb on + strand, within GFF4259 at 45.686 kb on - strand at 45.700 kb on + strand at 45.703 kb on + strand at 45.805 kb on + strand at 45.806 kb on - strand at 45.848 kb on + strand at 45.908 kb on + strand at 45.945 kb on + strand, within GFF4260 at 45.996 kb on + strand, within GFF4260 at 46.301 kb on - strand at 46.410 kb on + strand at 46.410 kb on + strand at 46.470 kb on - strand, within GFF4261 at 46.480 kb on - strand, within GFF4261 at 46.483 kb on - strand, within GFF4261 at 46.575 kb on - strand, within GFF4261
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 44,024 - GFF4258 0.54 +0.6 44,073 - GFF4258 0.56 +1.3 44,095 + GFF4258 0.57 +0.6 44,096 - GFF4258 0.58 -0.8 44,103 - GFF4258 0.58 -0.0 44,103 - GFF4258 0.58 -0.8 44,104 + GFF4258 0.58 -1.2 44,141 + GFF4258 0.60 +0.5 44,142 - GFF4258 0.60 +0.2 44,179 + GFF4258 0.62 +0.4 44,465 - GFF4258 0.75 -0.6 44,501 - GFF4258 0.77 -1.0 44,536 + GFF4258 0.79 +0.3 44,536 + GFF4258 0.79 +0.0 44,598 - GFF4258 0.82 -0.2 44,600 - GFF4258 0.82 +0.1 44,603 + GFF4258 0.82 -0.4 44,603 + GFF4258 0.82 +0.9 44,603 + GFF4258 0.82 +0.2 44,603 + GFF4258 0.82 -0.2 44,603 + GFF4258 0.82 +0.2 44,604 - GFF4258 0.82 +0.2 44,605 + GFF4258 0.82 -0.3 44,605 + GFF4258 0.82 +1.2 44,618 + GFF4258 0.82 -0.6 44,696 + GFF4258 0.86 +0.8 44,783 - -0.6 44,801 + -1.2 44,801 + +0.3 44,802 - +0.4 44,803 + -0.2 44,804 - +0.6 44,804 - -0.6 44,823 + -0.4 44,829 - -0.2 44,850 + +0.9 44,927 + -0.8 44,928 - -0.4 44,928 - -0.3 44,958 + -0.1 44,985 - -0.7 45,047 - -0.1 45,237 - GFF4259 0.34 +0.9 45,405 + GFF4259 0.60 +0.1 45,406 - GFF4259 0.60 +0.7 45,409 + GFF4259 0.61 +0.3 45,409 + GFF4259 0.61 -0.2 45,686 - -0.4 45,700 + +0.4 45,703 + -0.5 45,805 + +0.2 45,806 - +0.3 45,848 + +0.0 45,908 + +0.8 45,945 + GFF4260 0.21 +0.2 45,996 + GFF4260 0.39 +0.5 46,301 - -0.3 46,410 + -0.2 46,410 + -0.2 46,470 - GFF4261 0.11 +0.8 46,480 - GFF4261 0.11 +0.4 46,483 - GFF4261 0.11 +0.1 46,575 - GFF4261 0.17 -0.3
Or see this region's nucleotide sequence