Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF39

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF38 and GFF39 are separated by 71 nucleotidesGFF39 and GFF40 overlap by 4 nucleotides GFF38 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 16,059 to 19,493 GFF38 GFF39 - Ribonuclease HII (EC 3.1.26.4), at 19,565 to 20,161 GFF39 GFF40 - Lipid-A-disaccharide synthase (EC 2.4.1.182), at 20,158 to 21,306 GFF40 Position (kb) 19 20 21Strain fitness (log2 ratio) -1 0 1at 19.754 kb on - strand, within GFF39at 19.865 kb on - strand, within GFF39

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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19,754 - GFF39 0.32 +0.2
19,865 - GFF39 0.50 +1.1

Or see this region's nucleotide sequence