Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3466 and GFF3467 overlap by 21 nucleotides GFF3467 and GFF3468 are separated by 1 nucleotides GFF3468 and GFF3469 are separated by 30 nucleotides GFF3469 and GFF3470 overlap by 4 nucleotides GFF3470 and GFF3471 are separated by 40 nucleotides
GFF3466 - Transcriptional regulator, AraC family, at 218,240 to 219,034
GFF3466
GFF3467 - Putative inner membrane protein, at 219,014 to 219,460
GFF3467
GFF3468 - hypothetical protein, at 219,462 to 219,599
GFF3468
GFF3469 - hypothetical protein, at 219,630 to 219,773
GFF3469
GFF3470 - Uncharacterized protein YeaK, at 219,770 to 220,297
GFF3470
GFF3471 - Putative two-component response regulator and GGDEF family protein YeaJ, at 220,338 to 221,831
GFF3471
Position (kb) 219
220 Strain fitness (log2 ratio) -1
0
1 at 218.762 kb on - strand, within GFF3466 at 218.905 kb on + strand, within GFF3466 at 218.905 kb on + strand, within GFF3466 at 218.905 kb on + strand, within GFF3466 at 218.905 kb on + strand, within GFF3466 at 218.906 kb on - strand, within GFF3466 at 219.033 kb on - strand at 219.151 kb on + strand, within GFF3467 at 219.365 kb on - strand, within GFF3467 at 219.618 kb on + strand at 219.665 kb on + strand, within GFF3469 at 219.666 kb on - strand, within GFF3469 at 219.666 kb on - strand, within GFF3469 at 219.666 kb on - strand, within GFF3469 at 219.702 kb on - strand, within GFF3469 at 219.834 kb on + strand, within GFF3470 at 219.851 kb on - strand, within GFF3470 at 220.164 kb on - strand, within GFF3470 at 220.340 kb on - strand at 220.431 kb on - strand at 220.604 kb on + strand, within GFF3471
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 218,762 - GFF3466 0.66 -0.1 218,905 + GFF3466 0.84 +0.7 218,905 + GFF3466 0.84 -0.8 218,905 + GFF3466 0.84 -0.4 218,905 + GFF3466 0.84 +0.5 218,906 - GFF3466 0.84 +0.2 219,033 - +0.2 219,151 + GFF3467 0.31 -1.1 219,365 - GFF3467 0.79 -0.0 219,618 + -0.3 219,665 + GFF3469 0.24 -0.6 219,666 - GFF3469 0.25 -0.5 219,666 - GFF3469 0.25 -0.2 219,666 - GFF3469 0.25 +0.1 219,702 - GFF3469 0.50 -0.4 219,834 + GFF3470 0.12 +0.0 219,851 - GFF3470 0.15 -0.7 220,164 - GFF3470 0.75 +0.3 220,340 - +0.9 220,431 - +1.7 220,604 + GFF3471 0.18 +0.2
Or see this region's nucleotide sequence