Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2848 and GFF2849 overlap by 32 nucleotides GFF2849 and GFF2850 overlap by 25 nucleotides
GFF2848 - Paraquat-inducible protein A, at 369,884 to 371,167
GFF2848
GFF2849 - Paraquat-inducible protein B, at 371,136 to 373,769
GFF2849
GFF2850 - Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-), at 373,745 to 375,286
GFF2850
Position (kb) 371
372
373
374 Strain fitness (log2 ratio) -2
-1
0
1
2 at 370.153 kb on + strand, within GFF2848 at 370.157 kb on + strand, within GFF2848 at 370.396 kb on + strand, within GFF2848 at 370.428 kb on - strand, within GFF2848 at 370.483 kb on + strand, within GFF2848 at 370.483 kb on + strand, within GFF2848 at 370.671 kb on + strand, within GFF2848 at 370.671 kb on + strand, within GFF2848 at 370.749 kb on - strand, within GFF2848 at 370.777 kb on + strand, within GFF2848 at 370.847 kb on - strand, within GFF2848 at 370.882 kb on + strand, within GFF2848 at 370.882 kb on + strand, within GFF2848 at 370.906 kb on + strand, within GFF2848 at 371.017 kb on + strand, within GFF2848 at 371.041 kb on + strand at 371.249 kb on - strand at 371.259 kb on + strand at 371.294 kb on + strand at 371.325 kb on - strand at 371.415 kb on - strand, within GFF2849 at 371.526 kb on + strand, within GFF2849 at 371.526 kb on + strand, within GFF2849 at 371.604 kb on - strand, within GFF2849 at 371.674 kb on - strand, within GFF2849 at 371.703 kb on + strand, within GFF2849 at 371.709 kb on + strand, within GFF2849 at 371.828 kb on - strand, within GFF2849 at 371.945 kb on - strand, within GFF2849 at 371.946 kb on + strand, within GFF2849 at 371.949 kb on - strand, within GFF2849 at 371.956 kb on + strand, within GFF2849 at 372.627 kb on + strand, within GFF2849 at 372.656 kb on + strand, within GFF2849 at 372.812 kb on + strand, within GFF2849 at 372.813 kb on - strand, within GFF2849 at 372.944 kb on + strand, within GFF2849 at 373.290 kb on - strand, within GFF2849 at 373.292 kb on + strand, within GFF2849 at 373.379 kb on - strand, within GFF2849 at 373.379 kb on - strand, within GFF2849 at 373.416 kb on - strand, within GFF2849 at 373.555 kb on + strand at 373.578 kb on - strand at 373.625 kb on + strand at 373.626 kb on - strand at 373.626 kb on - strand at 373.811 kb on - strand at 373.966 kb on + strand, within GFF2850 at 373.967 kb on - strand, within GFF2850 at 373.968 kb on + strand, within GFF2850 at 373.989 kb on + strand, within GFF2850 at 374.192 kb on - strand, within GFF2850 at 374.192 kb on - strand, within GFF2850 at 374.216 kb on - strand, within GFF2850 at 374.326 kb on + strand, within GFF2850 at 374.455 kb on - strand, within GFF2850 at 374.459 kb on - strand, within GFF2850 at 374.639 kb on + strand, within GFF2850 at 374.640 kb on - strand, within GFF2850 at 374.640 kb on - strand, within GFF2850
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 370,153 + GFF2848 0.21 -0.2 370,157 + GFF2848 0.21 -0.6 370,396 + GFF2848 0.40 +0.7 370,428 - GFF2848 0.42 +0.0 370,483 + GFF2848 0.47 +0.4 370,483 + GFF2848 0.47 -0.3 370,671 + GFF2848 0.61 +0.4 370,671 + GFF2848 0.61 +0.6 370,749 - GFF2848 0.67 -0.6 370,777 + GFF2848 0.70 -0.4 370,847 - GFF2848 0.75 -0.7 370,882 + GFF2848 0.78 -0.7 370,882 + GFF2848 0.78 -0.2 370,906 + GFF2848 0.80 -0.0 371,017 + GFF2848 0.88 -0.7 371,041 + +0.7 371,249 - -0.7 371,259 + -0.0 371,294 + -1.1 371,325 - -1.1 371,415 - GFF2849 0.11 -0.3 371,526 + GFF2849 0.15 -1.3 371,526 + GFF2849 0.15 +0.0 371,604 - GFF2849 0.18 -0.3 371,674 - GFF2849 0.20 -1.7 371,703 + GFF2849 0.22 -0.2 371,709 + GFF2849 0.22 -0.5 371,828 - GFF2849 0.26 +0.9 371,945 - GFF2849 0.31 +0.6 371,946 + GFF2849 0.31 +0.1 371,949 - GFF2849 0.31 -1.0 371,956 + GFF2849 0.31 -0.0 372,627 + GFF2849 0.57 -0.5 372,656 + GFF2849 0.58 +0.0 372,812 + GFF2849 0.64 -0.8 372,813 - GFF2849 0.64 +0.3 372,944 + GFF2849 0.69 -0.5 373,290 - GFF2849 0.82 -1.3 373,292 + GFF2849 0.82 +0.0 373,379 - GFF2849 0.85 +0.2 373,379 - GFF2849 0.85 -0.1 373,416 - GFF2849 0.87 -1.0 373,555 + +0.5 373,578 - -0.1 373,625 + +0.1 373,626 - -2.3 373,626 - +0.3 373,811 - -0.5 373,966 + GFF2850 0.14 -0.1 373,967 - GFF2850 0.14 -0.8 373,968 + GFF2850 0.14 -0.1 373,989 + GFF2850 0.16 +2.4 374,192 - GFF2850 0.29 +0.6 374,192 - GFF2850 0.29 -1.3 374,216 - GFF2850 0.31 +1.1 374,326 + GFF2850 0.38 +0.8 374,455 - GFF2850 0.46 +0.1 374,459 - GFF2850 0.46 +0.8 374,639 + GFF2850 0.58 +0.6 374,640 - GFF2850 0.58 +1.1 374,640 - GFF2850 0.58 -0.9
Or see this region's nucleotide sequence