Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1846

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1845 and GFF1846 overlap by 11 nucleotidesGFF1846 and GFF1847 overlap by 4 nucleotides GFF1845 - Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3), at 36,629 to 38,257 GFF1845 GFF1846 - Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3), at 38,247 to 39,506 GFF1846 GFF1847 - Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3), at 39,503 to 40,693 GFF1847 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1at 37.451 kb on + strand, within GFF1845at 37.673 kb on - strand, within GFF1845at 38.154 kb on + strandat 38.155 kb on - strandat 38.155 kb on - strandat 38.155 kb on - strandat 38.155 kb on - strandat 38.267 kb on + strandat 38.472 kb on + strand, within GFF1846at 38.502 kb on - strand, within GFF1846at 38.531 kb on + strand, within GFF1846at 38.619 kb on - strand, within GFF1846at 38.779 kb on + strand, within GFF1846at 38.860 kb on - strand, within GFF1846at 38.878 kb on + strand, within GFF1846at 39.170 kb on - strand, within GFF1846at 39.279 kb on + strand, within GFF1846at 39.382 kb on - strandat 39.388 kb on + strandat 39.389 kb on - strandat 39.389 kb on - strandat 39.418 kb on + strandat 39.418 kb on + strandat 39.418 kb on + strandat 39.419 kb on - strandat 39.531 kb on + strandat 39.674 kb on - strand, within GFF1847at 39.724 kb on + strand, within GFF1847at 40.135 kb on + strand, within GFF1847at 40.204 kb on + strand, within GFF1847at 40.234 kb on + strand, within GFF1847at 40.235 kb on - strand, within GFF1847at 40.301 kb on - strand, within GFF1847at 40.385 kb on + strand, within GFF1847at 40.385 kb on + strand, within GFF1847at 40.385 kb on + strand, within GFF1847at 40.391 kb on - strand, within GFF1847at 40.473 kb on + strand, within GFF1847

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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37,451 + GFF1845 0.50 +0.3
37,673 - GFF1845 0.64 +0.2
38,154 + +0.4
38,155 - +0.1
38,155 - -0.4
38,155 - +0.2
38,155 - -0.2
38,267 + -0.1
38,472 + GFF1846 0.18 -0.1
38,502 - GFF1846 0.20 +0.4
38,531 + GFF1846 0.23 -0.3
38,619 - GFF1846 0.30 +0.1
38,779 + GFF1846 0.42 +0.2
38,860 - GFF1846 0.49 -0.5
38,878 + GFF1846 0.50 -0.2
39,170 - GFF1846 0.73 -1.1
39,279 + GFF1846 0.82 +1.1
39,382 - -0.1
39,388 + +0.1
39,389 - +0.4
39,389 - -0.0
39,418 + +0.2
39,418 + -1.1
39,418 + +0.1
39,419 - -0.2
39,531 + +0.1
39,674 - GFF1847 0.14 -1.2
39,724 + GFF1847 0.19 -1.5
40,135 + GFF1847 0.53 +0.5
40,204 + GFF1847 0.59 -0.4
40,234 + GFF1847 0.61 -1.5
40,235 - GFF1847 0.61 -0.1
40,301 - GFF1847 0.67 -0.5
40,385 + GFF1847 0.74 -0.6
40,385 + GFF1847 0.74 -0.4
40,385 + GFF1847 0.74 +0.1
40,391 - GFF1847 0.75 -0.6
40,473 + GFF1847 0.81 -2.5

Or see this region's nucleotide sequence