Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1188

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1185 and GFF1186 are separated by 8 nucleotidesGFF1186 and GFF1187 overlap by 1 nucleotidesGFF1187 and GFF1188 are separated by 78 nucleotidesGFF1188 and GFF1189 are separated by 19 nucleotidesGFF1189 and GFF1190 are separated by 54 nucleotides GFF1185 - IncF plasmid conjugative transfer protein TraD, at 30,607 to 32,850 GFF1185 GFF1186 - VapC toxin protein, at 32,859 to 33,257 GFF1186 GFF1187 - VapB protein (antitoxin to VapC), at 33,257 to 33,487 GFF1187 GFF1188 - IncF plasmid conjugative transfer DNA-nicking and unwinding protein TraI, at 33,566 to 38,824 GFF1188 GFF1189 - IncF plasmid conjugative transfer pilin acetylase TraX, at 38,844 to 39,584 GFF1189 GFF1190 - IncF plasmid conjugative transfer fertility inhibition protein FinO, at 39,639 to 40,202 GFF1190 Position (kb) 33 34 35 36 37 38 39Strain fitness (log2 ratio) -1 0 1at 32.617 kb on - strand, within GFF1185at 32.691 kb on + strandat 32.725 kb on + strandat 32.793 kb on + strandat 33.044 kb on - strand, within GFF1186at 33.124 kb on + strand, within GFF1186at 33.156 kb on - strand, within GFF1186at 33.233 kb on + strandat 33.234 kb on - strandat 33.234 kb on - strandat 33.236 kb on + strandat 33.246 kb on - strandat 33.304 kb on + strand, within GFF1187at 33.368 kb on - strand, within GFF1187at 33.470 kb on + strandat 33.471 kb on - strandat 33.505 kb on + strandat 33.506 kb on - strandat 33.512 kb on + strandat 33.513 kb on - strandat 33.517 kb on - strandat 33.574 kb on + strandat 33.575 kb on - strandat 33.614 kb on + strandat 33.615 kb on - strandat 33.628 kb on + strandat 33.628 kb on + strandat 33.628 kb on + strandat 33.628 kb on + strandat 33.628 kb on + strandat 33.629 kb on - strandat 33.632 kb on + strandat 33.633 kb on - strandat 33.635 kb on + strandat 33.636 kb on - strandat 33.636 kb on - strandat 33.636 kb on - strandat 33.636 kb on - strandat 33.862 kb on + strandat 33.863 kb on - strandat 34.037 kb on - strandat 34.121 kb on - strand, within GFF1188at 34.133 kb on + strand, within GFF1188at 34.134 kb on - strand, within GFF1188at 34.134 kb on - strand, within GFF1188at 34.134 kb on - strand, within GFF1188at 34.147 kb on - strand, within GFF1188at 34.231 kb on + strand, within GFF1188at 34.231 kb on + strand, within GFF1188at 34.231 kb on + strand, within GFF1188at 34.565 kb on - strand, within GFF1188at 34.565 kb on - strand, within GFF1188at 34.570 kb on + strand, within GFF1188at 35.071 kb on + strand, within GFF1188at 35.161 kb on - strand, within GFF1188at 35.161 kb on - strand, within GFF1188at 35.165 kb on - strand, within GFF1188at 35.403 kb on + strand, within GFF1188at 35.496 kb on - strand, within GFF1188at 35.506 kb on + strand, within GFF1188at 35.506 kb on + strand, within GFF1188at 35.507 kb on - strand, within GFF1188at 35.510 kb on + strand, within GFF1188at 35.510 kb on + strand, within GFF1188at 35.510 kb on + strand, within GFF1188at 35.511 kb on - strand, within GFF1188at 35.567 kb on + strand, within GFF1188at 35.717 kb on - strand, within GFF1188at 35.717 kb on - strand, within GFF1188at 35.773 kb on - strand, within GFF1188at 35.773 kb on - strand, within GFF1188at 36.006 kb on - strand, within GFF1188at 36.312 kb on + strand, within GFF1188at 36.317 kb on + strand, within GFF1188at 36.317 kb on + strand, within GFF1188at 36.318 kb on - strand, within GFF1188at 36.318 kb on - strand, within GFF1188at 36.318 kb on - strand, within GFF1188at 36.371 kb on + strand, within GFF1188at 36.496 kb on + strand, within GFF1188at 36.501 kb on + strand, within GFF1188at 36.531 kb on + strand, within GFF1188at 36.532 kb on - strand, within GFF1188at 36.951 kb on + strand, within GFF1188at 36.952 kb on - strand, within GFF1188at 37.010 kb on - strand, within GFF1188at 37.187 kb on + strand, within GFF1188at 37.209 kb on - strand, within GFF1188at 37.341 kb on + strand, within GFF1188at 37.342 kb on - strand, within GFF1188at 37.342 kb on - strand, within GFF1188at 37.433 kb on + strand, within GFF1188at 37.456 kb on + strand, within GFF1188at 37.486 kb on + strand, within GFF1188at 37.495 kb on + strand, within GFF1188at 37.507 kb on + strand, within GFF1188at 37.507 kb on + strand, within GFF1188at 37.507 kb on + strand, within GFF1188at 37.507 kb on + strand, within GFF1188at 37.508 kb on - strand, within GFF1188at 37.545 kb on + strand, within GFF1188at 37.548 kb on - strand, within GFF1188at 37.619 kb on + strand, within GFF1188at 37.732 kb on + strand, within GFF1188at 37.732 kb on + strand, within GFF1188at 37.850 kb on + strand, within GFF1188at 37.850 kb on + strand, within GFF1188at 37.851 kb on - strand, within GFF1188at 37.851 kb on - strand, within GFF1188at 38.117 kb on + strand, within GFF1188at 38.129 kb on + strand, within GFF1188at 38.130 kb on - strand, within GFF1188at 38.130 kb on - strand, within GFF1188at 38.130 kb on - strand, within GFF1188at 38.173 kb on + strand, within GFF1188at 38.311 kb on + strandat 38.867 kb on + strandat 38.868 kb on - strandat 38.985 kb on - strand, within GFF1189at 39.083 kb on + strand, within GFF1189at 39.083 kb on + strand, within GFF1189at 39.084 kb on - strand, within GFF1189at 39.084 kb on - strand, within GFF1189at 39.171 kb on + strand, within GFF1189at 39.266 kb on - strand, within GFF1189at 39.349 kb on - strand, within GFF1189at 39.475 kb on + strand, within GFF1189at 39.543 kb on + strandat 39.543 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.723 kb on - strand, within GFF1190at 39.723 kb on - strand, within GFF1190

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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32,617 - GFF1185 0.90 +0.3
32,691 + +0.8
32,725 + -0.6
32,793 + +0.2
33,044 - GFF1186 0.46 -0.3
33,124 + GFF1186 0.66 -0.0
33,156 - GFF1186 0.74 -0.1
33,233 + -0.1
33,234 - +0.1
33,234 - -0.2
33,236 + -0.3
33,246 - -0.1
33,304 + GFF1187 0.20 +0.1
33,368 - GFF1187 0.48 +0.4
33,470 + +0.4
33,471 - -0.8
33,505 + +0.3
33,506 - +0.2
33,512 + -0.4
33,513 - -0.5
33,517 - -0.2
33,574 + +0.3
33,575 - +0.1
33,614 + -0.3
33,615 - -0.2
33,628 + -0.3
33,628 + +0.2
33,628 + -1.0
33,628 + +0.1
33,628 + -0.3
33,629 - +0.2
33,632 + +0.4
33,633 - +0.2
33,635 + +0.5
33,636 - +0.5
33,636 - +0.5
33,636 - +0.2
33,636 - -0.3
33,862 + +0.5
33,863 - -0.8
34,037 - -0.6
34,121 - GFF1188 0.11 -1.0
34,133 + GFF1188 0.11 +0.1
34,134 - GFF1188 0.11 +0.2
34,134 - GFF1188 0.11 +0.4
34,134 - GFF1188 0.11 -0.2
34,147 - GFF1188 0.11 +0.1
34,231 + GFF1188 0.13 +0.3
34,231 + GFF1188 0.13 +0.9
34,231 + GFF1188 0.13 +0.0
34,565 - GFF1188 0.19 +0.2
34,565 - GFF1188 0.19 +0.0
34,570 + GFF1188 0.19 -0.1
35,071 + GFF1188 0.29 -0.2
35,161 - GFF1188 0.30 -0.4
35,161 - GFF1188 0.30 -0.1
35,165 - GFF1188 0.30 +0.4
35,403 + GFF1188 0.35 -0.2
35,496 - GFF1188 0.37 +0.5
35,506 + GFF1188 0.37 -0.1
35,506 + GFF1188 0.37 +0.3
35,507 - GFF1188 0.37 -0.8
35,510 + GFF1188 0.37 -0.2
35,510 + GFF1188 0.37 -0.2
35,510 + GFF1188 0.37 +0.1
35,511 - GFF1188 0.37 +0.2
35,567 + GFF1188 0.38 +0.1
35,717 - GFF1188 0.41 -0.2
35,717 - GFF1188 0.41 -1.0
35,773 - GFF1188 0.42 +0.9
35,773 - GFF1188 0.42 -0.2
36,006 - GFF1188 0.46 +0.4
36,312 + GFF1188 0.52 +0.0
36,317 + GFF1188 0.52 -0.1
36,317 + GFF1188 0.52 +0.2
36,318 - GFF1188 0.52 +0.1
36,318 - GFF1188 0.52 +0.8
36,318 - GFF1188 0.52 -0.1
36,371 + GFF1188 0.53 -0.1
36,496 + GFF1188 0.56 +0.4
36,501 + GFF1188 0.56 -0.8
36,531 + GFF1188 0.56 +0.3
36,532 - GFF1188 0.56 +0.1
36,951 + GFF1188 0.64 -0.4
36,952 - GFF1188 0.64 +0.2
37,010 - GFF1188 0.65 -0.2
37,187 + GFF1188 0.69 -0.4
37,209 - GFF1188 0.69 -0.7
37,341 + GFF1188 0.72 -0.5
37,342 - GFF1188 0.72 -0.2
37,342 - GFF1188 0.72 +0.3
37,433 + GFF1188 0.74 +0.4
37,456 + GFF1188 0.74 -0.1
37,486 + GFF1188 0.75 +0.2
37,495 + GFF1188 0.75 +0.7
37,507 + GFF1188 0.75 -0.1
37,507 + GFF1188 0.75 +0.2
37,507 + GFF1188 0.75 +0.4
37,507 + GFF1188 0.75 -0.0
37,508 - GFF1188 0.75 +0.1
37,545 + GFF1188 0.76 -0.6
37,548 - GFF1188 0.76 +0.4
37,619 + GFF1188 0.77 -0.7
37,732 + GFF1188 0.79 -0.1
37,732 + GFF1188 0.79 +0.3
37,850 + GFF1188 0.81 -0.8
37,850 + GFF1188 0.81 +0.2
37,851 - GFF1188 0.81 -0.0
37,851 - GFF1188 0.81 -0.2
38,117 + GFF1188 0.87 +0.7
38,129 + GFF1188 0.87 +0.9
38,130 - GFF1188 0.87 -0.6
38,130 - GFF1188 0.87 -0.0
38,130 - GFF1188 0.87 +0.5
38,173 + GFF1188 0.88 +0.5
38,311 + +1.0
38,867 + +0.1
38,868 - +0.4
38,985 - GFF1189 0.19 -0.2
39,083 + GFF1189 0.32 +0.0
39,083 + GFF1189 0.32 +0.2
39,084 - GFF1189 0.32 +0.0
39,084 - GFF1189 0.32 +0.3
39,171 + GFF1189 0.44 +0.0
39,266 - GFF1189 0.57 +0.2
39,349 - GFF1189 0.68 +0.6
39,475 + GFF1189 0.85 -0.2
39,543 + +0.5
39,543 + +0.2
39,633 + +0.1
39,633 + -0.4
39,633 + -1.3
39,633 + +0.0
39,633 + -0.0
39,633 + +0.1
39,723 - GFF1190 0.15 -0.2
39,723 - GFF1190 0.15 -0.2

Or see this region's nucleotide sequence