Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1071 and GFF1072 are separated by 153 nucleotides GFF1072 and GFF1073 are separated by 70 nucleotides GFF1073 and GFF1074 are separated by 338 nucleotides
GFF1071 - type 1 fimbriae anchoring protein FimD, at 252,864 to 255,293
GFF1071
GFF1072 - Putative fimbrial chaperone protein, at 255,447 to 256,130
GFF1072
GFF1073 - putative fimbrial protein, at 256,201 to 256,746
GFF1073
GFF1074 - putative inner membrane protein, at 257,085 to 257,756
GFF1074
Position (kb) 255
256
257 Strain fitness (log2 ratio) -1
0
1 at 254.489 kb on + strand, within GFF1071 at 254.507 kb on - strand, within GFF1071 at 254.594 kb on + strand, within GFF1071 at 254.594 kb on + strand, within GFF1071 at 254.617 kb on - strand, within GFF1071 at 254.617 kb on - strand, within GFF1071 at 254.720 kb on - strand, within GFF1071 at 254.770 kb on + strand, within GFF1071 at 254.771 kb on - strand, within GFF1071 at 254.822 kb on - strand, within GFF1071 at 254.999 kb on + strand, within GFF1071 at 255.347 kb on + strand at 255.405 kb on - strand at 255.625 kb on + strand, within GFF1072 at 255.629 kb on - strand, within GFF1072 at 255.731 kb on - strand, within GFF1072 at 255.794 kb on + strand, within GFF1072 at 255.810 kb on - strand, within GFF1072 at 255.812 kb on + strand, within GFF1072 at 255.828 kb on - strand, within GFF1072 at 256.158 kb on + strand at 256.221 kb on - strand at 256.236 kb on + strand at 256.286 kb on + strand, within GFF1073 at 256.289 kb on + strand, within GFF1073 at 256.289 kb on + strand, within GFF1073 at 256.293 kb on + strand, within GFF1073 at 256.294 kb on - strand, within GFF1073 at 256.436 kb on + strand, within GFF1073 at 256.493 kb on - strand, within GFF1073 at 256.586 kb on + strand, within GFF1073
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI remove 254,489 + GFF1071 0.67 -0.6 254,507 - GFF1071 0.68 -0.4 254,594 + GFF1071 0.71 -1.0 254,594 + GFF1071 0.71 -0.7 254,617 - GFF1071 0.72 +0.2 254,617 - GFF1071 0.72 +0.3 254,720 - GFF1071 0.76 +0.3 254,770 + GFF1071 0.78 +0.6 254,771 - GFF1071 0.78 +0.0 254,822 - GFF1071 0.81 -0.1 254,999 + GFF1071 0.88 -0.2 255,347 + +0.4 255,405 - +1.0 255,625 + GFF1072 0.26 -0.8 255,629 - GFF1072 0.27 -0.3 255,731 - GFF1072 0.42 -0.9 255,794 + GFF1072 0.51 +0.2 255,810 - GFF1072 0.53 -0.7 255,812 + GFF1072 0.53 -0.6 255,828 - GFF1072 0.56 -0.1 256,158 + -0.5 256,221 - -0.1 256,236 + +0.5 256,286 + GFF1073 0.16 +0.1 256,289 + GFF1073 0.16 -0.4 256,289 + GFF1073 0.16 -0.0 256,293 + GFF1073 0.17 -0.1 256,294 - GFF1073 0.17 -0.2 256,436 + GFF1073 0.43 +0.2 256,493 - GFF1073 0.53 +0.4 256,586 + GFF1073 0.71 +0.2
Or see this region's nucleotide sequence