Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2289

Experiment: m.b. 20C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2288 and B158DRAFT_2289 overlap by 4 nucleotidesB158DRAFT_2289 and B158DRAFT_2290 overlap by 4 nucleotidesB158DRAFT_2290 and B158DRAFT_2291 overlap by 13 nucleotides B158DRAFT_2288: B158DRAFT_2288 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 452,843 to 454,540 _2288 B158DRAFT_2289: B158DRAFT_2289 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 454,537 to 455,133 _2289 B158DRAFT_2290: B158DRAFT_2290 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 455,130 to 455,738 _2290 B158DRAFT_2291: B158DRAFT_2291 - imidazoleglycerol phosphate synthase, cyclase subunit, at 455,726 to 456,529 _2291 Position (kb) 454 455 456Strain fitness (log2 ratio) -1 0 1 2at 453.572 kb on - strand, within B158DRAFT_2288at 453.779 kb on - strand, within B158DRAFT_2288at 453.790 kb on + strand, within B158DRAFT_2288at 453.790 kb on + strand, within B158DRAFT_2288at 453.798 kb on - strand, within B158DRAFT_2288at 453.803 kb on - strand, within B158DRAFT_2288at 453.849 kb on - strand, within B158DRAFT_2288at 453.861 kb on + strand, within B158DRAFT_2288at 453.878 kb on + strand, within B158DRAFT_2288at 453.888 kb on + strand, within B158DRAFT_2288at 453.946 kb on + strand, within B158DRAFT_2288at 454.041 kb on + strand, within B158DRAFT_2288at 454.041 kb on + strand, within B158DRAFT_2288at 454.084 kb on - strand, within B158DRAFT_2288at 454.105 kb on + strand, within B158DRAFT_2288at 454.113 kb on - strand, within B158DRAFT_2288at 454.113 kb on - strand, within B158DRAFT_2288at 454.142 kb on + strand, within B158DRAFT_2288at 454.142 kb on + strand, within B158DRAFT_2288at 454.142 kb on + strand, within B158DRAFT_2288at 454.142 kb on + strand, within B158DRAFT_2288at 454.142 kb on + strand, within B158DRAFT_2288at 454.142 kb on + strand, within B158DRAFT_2288at 454.142 kb on + strand, within B158DRAFT_2288at 454.150 kb on - strand, within B158DRAFT_2288at 454.150 kb on - strand, within B158DRAFT_2288at 454.150 kb on - strand, within B158DRAFT_2288at 454.150 kb on - strand, within B158DRAFT_2288at 454.173 kb on + strand, within B158DRAFT_2288at 454.173 kb on + strand, within B158DRAFT_2288at 454.173 kb on + strand, within B158DRAFT_2288at 454.173 kb on + strand, within B158DRAFT_2288at 454.173 kb on + strand, within B158DRAFT_2288at 454.173 kb on + strand, within B158DRAFT_2288at 454.173 kb on + strand, within B158DRAFT_2288at 454.181 kb on - strand, within B158DRAFT_2288at 454.181 kb on - strand, within B158DRAFT_2288at 454.181 kb on - strand, within B158DRAFT_2288at 454.181 kb on - strand, within B158DRAFT_2288at 454.181 kb on - strand, within B158DRAFT_2288at 454.181 kb on - strand, within B158DRAFT_2288at 454.324 kb on + strand, within B158DRAFT_2288at 454.324 kb on + strand, within B158DRAFT_2288at 454.324 kb on + strand, within B158DRAFT_2288at 454.324 kb on + strand, within B158DRAFT_2288at 454.324 kb on + strand, within B158DRAFT_2288at 454.332 kb on - strand, within B158DRAFT_2288at 454.332 kb on - strand, within B158DRAFT_2288at 454.332 kb on - strand, within B158DRAFT_2288at 454.352 kb on - strand, within B158DRAFT_2288at 454.352 kb on - strand, within B158DRAFT_2288at 454.361 kb on + strand, within B158DRAFT_2288at 454.419 kb on - strandat 454.463 kb on - strandat 454.612 kb on - strand, within B158DRAFT_2289at 454.641 kb on + strand, within B158DRAFT_2289at 454.646 kb on + strand, within B158DRAFT_2289at 454.667 kb on + strand, within B158DRAFT_2289at 454.797 kb on + strand, within B158DRAFT_2289at 454.797 kb on + strand, within B158DRAFT_2289at 454.805 kb on - strand, within B158DRAFT_2289at 454.858 kb on + strand, within B158DRAFT_2289at 454.863 kb on + strand, within B158DRAFT_2289at 454.866 kb on - strand, within B158DRAFT_2289at 454.874 kb on + strand, within B158DRAFT_2289at 454.876 kb on + strand, within B158DRAFT_2289at 454.968 kb on + strand, within B158DRAFT_2289at 454.969 kb on + strand, within B158DRAFT_2289at 455.007 kb on + strand, within B158DRAFT_2289at 455.007 kb on + strand, within B158DRAFT_2289at 455.007 kb on + strand, within B158DRAFT_2289at 455.007 kb on + strand, within B158DRAFT_2289at 455.015 kb on - strand, within B158DRAFT_2289at 455.015 kb on - strand, within B158DRAFT_2289at 455.015 kb on - strand, within B158DRAFT_2289at 455.015 kb on - strand, within B158DRAFT_2289at 455.044 kb on + strand, within B158DRAFT_2289at 455.069 kb on + strand, within B158DRAFT_2289at 455.077 kb on - strandat 455.093 kb on + strandat 455.122 kb on - strandat 455.129 kb on - strandat 455.137 kb on + strandat 455.137 kb on + strandat 455.224 kb on + strand, within B158DRAFT_2290at 455.230 kb on + strand, within B158DRAFT_2290at 455.246 kb on - strand, within B158DRAFT_2290at 455.276 kb on + strand, within B158DRAFT_2290at 455.279 kb on - strand, within B158DRAFT_2290at 455.349 kb on - strand, within B158DRAFT_2290at 455.391 kb on + strand, within B158DRAFT_2290at 455.398 kb on + strand, within B158DRAFT_2290at 455.409 kb on + strand, within B158DRAFT_2290at 455.412 kb on - strand, within B158DRAFT_2290at 455.412 kb on - strand, within B158DRAFT_2290at 455.420 kb on - strand, within B158DRAFT_2290at 455.591 kb on + strand, within B158DRAFT_2290at 455.606 kb on + strand, within B158DRAFT_2290at 455.614 kb on - strand, within B158DRAFT_2290at 455.727 kb on + strandat 455.792 kb on + strandat 455.795 kb on - strandat 455.799 kb on + strandat 455.828 kb on + strand, within B158DRAFT_2291at 455.836 kb on + strand, within B158DRAFT_2291at 455.836 kb on + strand, within B158DRAFT_2291at 455.836 kb on - strand, within B158DRAFT_2291at 455.836 kb on - strand, within B158DRAFT_2291at 455.844 kb on - strand, within B158DRAFT_2291at 455.844 kb on - strand, within B158DRAFT_2291at 455.844 kb on - strand, within B158DRAFT_2291at 455.845 kb on - strand, within B158DRAFT_2291at 455.927 kb on - strand, within B158DRAFT_2291at 455.949 kb on + strand, within B158DRAFT_2291at 455.957 kb on - strand, within B158DRAFT_2291at 456.064 kb on - strand, within B158DRAFT_2291at 456.126 kb on + strand, within B158DRAFT_2291

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 20C
remove
453,572 - B158DRAFT_2288 0.43 +0.2
453,779 - B158DRAFT_2288 0.55 +0.1
453,790 + B158DRAFT_2288 0.56 -0.5
453,790 + B158DRAFT_2288 0.56 -0.3
453,798 - B158DRAFT_2288 0.56 +0.1
453,803 - B158DRAFT_2288 0.57 -0.3
453,849 - B158DRAFT_2288 0.59 +0.4
453,861 + B158DRAFT_2288 0.60 -0.2
453,878 + B158DRAFT_2288 0.61 -0.2
453,888 + B158DRAFT_2288 0.62 +0.6
453,946 + B158DRAFT_2288 0.65 +0.2
454,041 + B158DRAFT_2288 0.71 +0.6
454,041 + B158DRAFT_2288 0.71 -0.2
454,084 - B158DRAFT_2288 0.73 -0.2
454,105 + B158DRAFT_2288 0.74 +0.2
454,113 - B158DRAFT_2288 0.75 -0.1
454,113 - B158DRAFT_2288 0.75 +0.5
454,142 + B158DRAFT_2288 0.77 -0.5
454,142 + B158DRAFT_2288 0.77 -0.4
454,142 + B158DRAFT_2288 0.77 -0.3
454,142 + B158DRAFT_2288 0.77 +0.5
454,142 + B158DRAFT_2288 0.77 +0.4
454,142 + B158DRAFT_2288 0.77 -0.2
454,142 + B158DRAFT_2288 0.77 -0.3
454,150 - B158DRAFT_2288 0.77 +0.2
454,150 - B158DRAFT_2288 0.77 -0.3
454,150 - B158DRAFT_2288 0.77 +0.2
454,150 - B158DRAFT_2288 0.77 -0.0
454,173 + B158DRAFT_2288 0.78 -0.0
454,173 + B158DRAFT_2288 0.78 -0.2
454,173 + B158DRAFT_2288 0.78 +0.2
454,173 + B158DRAFT_2288 0.78 -0.0
454,173 + B158DRAFT_2288 0.78 +0.5
454,173 + B158DRAFT_2288 0.78 -0.3
454,173 + B158DRAFT_2288 0.78 -0.0
454,181 - B158DRAFT_2288 0.79 +0.1
454,181 - B158DRAFT_2288 0.79 -0.0
454,181 - B158DRAFT_2288 0.79 +0.3
454,181 - B158DRAFT_2288 0.79 +0.1
454,181 - B158DRAFT_2288 0.79 +0.2
454,181 - B158DRAFT_2288 0.79 -0.3
454,324 + B158DRAFT_2288 0.87 +0.8
454,324 + B158DRAFT_2288 0.87 +0.3
454,324 + B158DRAFT_2288 0.87 -0.6
454,324 + B158DRAFT_2288 0.87 +0.5
454,324 + B158DRAFT_2288 0.87 +0.2
454,332 - B158DRAFT_2288 0.88 -0.3
454,332 - B158DRAFT_2288 0.88 -0.2
454,332 - B158DRAFT_2288 0.88 -0.2
454,352 - B158DRAFT_2288 0.89 +0.1
454,352 - B158DRAFT_2288 0.89 +0.2
454,361 + B158DRAFT_2288 0.89 -0.1
454,419 - +0.5
454,463 - -0.1
454,612 - B158DRAFT_2289 0.13 +0.2
454,641 + B158DRAFT_2289 0.17 +0.5
454,646 + B158DRAFT_2289 0.18 -0.1
454,667 + B158DRAFT_2289 0.22 +0.6
454,797 + B158DRAFT_2289 0.44 -0.3
454,797 + B158DRAFT_2289 0.44 +0.4
454,805 - B158DRAFT_2289 0.45 +0.3
454,858 + B158DRAFT_2289 0.54 +0.2
454,863 + B158DRAFT_2289 0.55 -0.7
454,866 - B158DRAFT_2289 0.55 +0.1
454,874 + B158DRAFT_2289 0.56 +0.2
454,876 + B158DRAFT_2289 0.57 +0.1
454,968 + B158DRAFT_2289 0.72 +1.0
454,969 + B158DRAFT_2289 0.72 +2.0
455,007 + B158DRAFT_2289 0.79 -0.9
455,007 + B158DRAFT_2289 0.79 +0.3
455,007 + B158DRAFT_2289 0.79 +0.1
455,007 + B158DRAFT_2289 0.79 +0.1
455,015 - B158DRAFT_2289 0.80 -0.1
455,015 - B158DRAFT_2289 0.80 +0.1
455,015 - B158DRAFT_2289 0.80 +0.3
455,015 - B158DRAFT_2289 0.80 -0.1
455,044 + B158DRAFT_2289 0.85 -0.3
455,069 + B158DRAFT_2289 0.89 -0.1
455,077 - -0.7
455,093 + -0.0
455,122 - -0.0
455,129 - -0.1
455,137 + -0.1
455,137 + -0.3
455,224 + B158DRAFT_2290 0.15 +0.3
455,230 + B158DRAFT_2290 0.16 +0.2
455,246 - B158DRAFT_2290 0.19 -0.3
455,276 + B158DRAFT_2290 0.24 +0.2
455,279 - B158DRAFT_2290 0.24 -0.1
455,349 - B158DRAFT_2290 0.36 -0.3
455,391 + B158DRAFT_2290 0.43 -0.3
455,398 + B158DRAFT_2290 0.44 +0.3
455,409 + B158DRAFT_2290 0.46 -1.5
455,412 - B158DRAFT_2290 0.46 +0.1
455,412 - B158DRAFT_2290 0.46 -0.1
455,420 - B158DRAFT_2290 0.48 +0.4
455,591 + B158DRAFT_2290 0.76 -0.2
455,606 + B158DRAFT_2290 0.78 -0.1
455,614 - B158DRAFT_2290 0.79 +0.5
455,727 + +0.4
455,792 + +0.0
455,795 - -0.6
455,799 + +0.6
455,828 + B158DRAFT_2291 0.13 +0.0
455,836 + B158DRAFT_2291 0.14 +0.0
455,836 + B158DRAFT_2291 0.14 -0.2
455,836 - B158DRAFT_2291 0.14 -0.1
455,836 - B158DRAFT_2291 0.14 -0.8
455,844 - B158DRAFT_2291 0.15 -1.2
455,844 - B158DRAFT_2291 0.15 -0.0
455,844 - B158DRAFT_2291 0.15 -0.5
455,845 - B158DRAFT_2291 0.15 -0.1
455,927 - B158DRAFT_2291 0.25 +0.1
455,949 + B158DRAFT_2291 0.28 +0.0
455,957 - B158DRAFT_2291 0.29 -0.3
456,064 - B158DRAFT_2291 0.42 +0.3
456,126 + B158DRAFT_2291 0.50 +0.7

Or see this region's nucleotide sequence