Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1138

Experiment: m.b. 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1136 and B158DRAFT_1137 are separated by 106 nucleotidesB158DRAFT_1137 and B158DRAFT_1138 overlap by 14 nucleotidesB158DRAFT_1138 and B158DRAFT_1139 are separated by 8 nucleotidesB158DRAFT_1139 and B158DRAFT_1140 are separated by 20 nucleotides B158DRAFT_1136: B158DRAFT_1136 - Holliday junction DNA helicase subunit RuvB, at 1,175,300 to 1,176,319 _1136 B158DRAFT_1137: B158DRAFT_1137 - tol-pal system-associated acyl-CoA thioesterase, at 1,176,426 to 1,176,845 _1137 B158DRAFT_1138: B158DRAFT_1138 - Cell division and transport-associated protein TolQ (TC 2.C.1.2.1), at 1,176,832 to 1,177,545 _1138 B158DRAFT_1139: B158DRAFT_1139 - Cell division and transport-associated protein TolR (TC 2.C.1.2.1), at 1,177,554 to 1,177,982 _1139 B158DRAFT_1140: B158DRAFT_1140 - TolA protein, at 1,178,003 to 1,178,899 _1140 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -2 -1 0 1at 1175.839 kb on - strand, within B158DRAFT_1136at 1175.839 kb on - strand, within B158DRAFT_1136at 1176.060 kb on - strand, within B158DRAFT_1136at 1176.077 kb on + strand, within B158DRAFT_1136at 1176.085 kb on - strand, within B158DRAFT_1136at 1176.116 kb on + strand, within B158DRAFT_1136at 1176.134 kb on + strand, within B158DRAFT_1136at 1176.134 kb on + strand, within B158DRAFT_1136at 1176.142 kb on - strand, within B158DRAFT_1136at 1176.246 kb on - strandat 1176.428 kb on - strandat 1176.623 kb on + strand, within B158DRAFT_1137

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 20C
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1,175,839 - B158DRAFT_1136 0.53 -0.9
1,175,839 - B158DRAFT_1136 0.53 -2.2
1,176,060 - B158DRAFT_1136 0.75 -1.5
1,176,077 + B158DRAFT_1136 0.76 -2.6
1,176,085 - B158DRAFT_1136 0.77 -0.7
1,176,116 + B158DRAFT_1136 0.80 -2.0
1,176,134 + B158DRAFT_1136 0.82 -0.9
1,176,134 + B158DRAFT_1136 0.82 -2.0
1,176,142 - B158DRAFT_1136 0.83 -1.5
1,176,246 - -0.2
1,176,428 - -0.5
1,176,623 + B158DRAFT_1137 0.47 -0.2

Or see this region's nucleotide sequence