Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0818 and Atu0819 are separated by 225 nucleotides Atu0819 and Atu0820 are separated by 245 nucleotides Atu0820 and Atu0821 are separated by 196 nucleotides
Atu0818: Atu0818 - phosphoadenosine phosphosulfate reductase, at 816,493 to 817,254
Atu0818
Atu0819: Atu0819 - hypothetical protein, at 817,480 to 817,920
Atu0819
Atu0820: Atu0820 - ABC transporter, substrate binding protein (sulfate), at 818,166 to 819,191
Atu0820
Atu0821: Atu0821 - ABC transporter, membrane spanning protein, at 819,388 to 820,245
Atu0821
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1 at 817.185 kb on + strand at 817.200 kb on + strand at 817.203 kb on - strand at 817.287 kb on + strand at 817.340 kb on - strand at 817.535 kb on - strand, within Atu0819 at 817.701 kb on - strand, within Atu0819 at 817.711 kb on + strand, within Atu0819 at 817.711 kb on + strand, within Atu0819 at 817.763 kb on + strand, within Atu0819 at 817.773 kb on + strand, within Atu0819 at 817.791 kb on - strand, within Atu0819 at 817.835 kb on - strand, within Atu0819 at 817.999 kb on - strand at 818.001 kb on + strand at 818.016 kb on - strand at 818.016 kb on - strand at 818.161 kb on - strand at 818.206 kb on + strand at 818.266 kb on - strand at 818.281 kb on + strand, within Atu0820 at 818.321 kb on + strand, within Atu0820 at 818.339 kb on - strand, within Atu0820 at 818.341 kb on + strand, within Atu0820 at 818.348 kb on - strand, within Atu0820 at 818.407 kb on + strand, within Atu0820 at 818.486 kb on + strand, within Atu0820 at 818.560 kb on + strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.625 kb on - strand, within Atu0820 at 818.658 kb on - strand, within Atu0820 at 818.664 kb on + strand, within Atu0820 at 818.668 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.708 kb on + strand, within Atu0820 at 818.714 kb on + strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.740 kb on - strand, within Atu0820 at 818.782 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.800 kb on - strand, within Atu0820 at 818.930 kb on - strand, within Atu0820 at 818.979 kb on - strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 819.020 kb on + strand, within Atu0820 at 819.022 kb on + strand, within Atu0820 at 819.037 kb on + strand, within Atu0820 at 819.122 kb on + strand at 819.130 kb on - strand at 819.459 kb on - strand at 819.502 kb on - strand, within Atu0821 at 819.534 kb on + strand, within Atu0821 at 819.578 kb on + strand, within Atu0821 at 819.737 kb on - strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.754 kb on - strand, within Atu0821 at 819.763 kb on + strand, within Atu0821 at 819.770 kb on - strand, within Atu0821 at 819.821 kb on + strand, within Atu0821 at 819.829 kb on - strand, within Atu0821 at 819.918 kb on + strand, within Atu0821 at 819.968 kb on + strand, within Atu0821 at 819.984 kb on - strand, within Atu0821 at 819.994 kb on + strand, within Atu0821 at 820.054 kb on + strand, within Atu0821 at 820.062 kb on - strand, within Atu0821 at 820.101 kb on + strand, within Atu0821
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 817,185 + -0.5 817,200 + -0.6 817,203 - -0.8 817,287 + +0.5 817,340 - -0.7 817,535 - Atu0819 0.12 +0.1 817,701 - Atu0819 0.50 -0.1 817,711 + Atu0819 0.52 -0.5 817,711 + Atu0819 0.52 +0.2 817,763 + Atu0819 0.64 -1.2 817,773 + Atu0819 0.66 +0.2 817,791 - Atu0819 0.71 -0.2 817,835 - Atu0819 0.80 +0.6 817,999 - -0.0 818,001 + -0.5 818,016 - +0.2 818,016 - -0.5 818,161 - -0.6 818,206 + +0.2 818,266 - +0.2 818,281 + Atu0820 0.11 +0.9 818,321 + Atu0820 0.15 -0.6 818,339 - Atu0820 0.17 +0.4 818,341 + Atu0820 0.17 -0.9 818,348 - Atu0820 0.18 -0.1 818,407 + Atu0820 0.23 -0.3 818,486 + Atu0820 0.31 +0.2 818,560 + Atu0820 0.38 +0.2 818,569 - Atu0820 0.39 -0.7 818,569 - Atu0820 0.39 +0.0 818,569 - Atu0820 0.39 +0.2 818,625 - Atu0820 0.45 -0.4 818,658 - Atu0820 0.48 -0.3 818,664 + Atu0820 0.49 +0.1 818,668 + Atu0820 0.49 +0.2 818,687 + Atu0820 0.51 +0.0 818,687 + Atu0820 0.51 -0.3 818,687 + Atu0820 0.51 -1.2 818,695 - Atu0820 0.52 +0.1 818,695 - Atu0820 0.52 -0.2 818,695 - Atu0820 0.52 +0.1 818,695 - Atu0820 0.52 -0.8 818,708 + Atu0820 0.53 -0.2 818,714 + Atu0820 0.53 -0.0 818,716 - Atu0820 0.54 -0.2 818,716 - Atu0820 0.54 +0.1 818,740 - Atu0820 0.56 +0.1 818,782 + Atu0820 0.60 +0.7 818,792 + Atu0820 0.61 -0.1 818,792 + Atu0820 0.61 +0.1 818,800 - Atu0820 0.62 +0.6 818,930 - Atu0820 0.74 -0.4 818,979 - Atu0820 0.79 -0.3 818,997 + Atu0820 0.81 -0.1 818,997 + Atu0820 0.81 +0.9 819,020 + Atu0820 0.83 -0.3 819,022 + Atu0820 0.83 -1.3 819,037 + Atu0820 0.85 -0.1 819,122 + +0.3 819,130 - +0.5 819,459 - +1.0 819,502 - Atu0821 0.13 +0.3 819,534 + Atu0821 0.17 +0.6 819,578 + Atu0821 0.22 +0.2 819,737 - Atu0821 0.41 +0.3 819,746 + Atu0821 0.42 -2.0 819,746 + Atu0821 0.42 +0.4 819,746 + Atu0821 0.42 +0.9 819,746 + Atu0821 0.42 -0.2 819,754 - Atu0821 0.43 +0.4 819,763 + Atu0821 0.44 -0.0 819,770 - Atu0821 0.45 +0.2 819,821 + Atu0821 0.50 -0.2 819,829 - Atu0821 0.51 -0.2 819,918 + Atu0821 0.62 -0.3 819,968 + Atu0821 0.68 -0.4 819,984 - Atu0821 0.69 +0.9 819,994 + Atu0821 0.71 +0.7 820,054 + Atu0821 0.78 -0.4 820,062 - Atu0821 0.79 -0.0 820,101 + Atu0821 0.83 +0.1
Or see this region's nucleotide sequence