Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2105 and PfGW456L13_2106 are separated by 196 nucleotides PfGW456L13_2106 and PfGW456L13_2107 are separated by 145 nucleotides PfGW456L13_2107 and PfGW456L13_2108 overlap by 1 nucleotides PfGW456L13_2108 and PfGW456L13_2109 are separated by 3 nucleotides
PfGW456L13_2105 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,310,674 to 2,311,414
_2105
PfGW456L13_2106 - Acyl carrier protein, at 2,311,611 to 2,311,847
_2106
PfGW456L13_2107 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 2,311,993 to 2,313,201
_2107
PfGW456L13_2108 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 2,313,201 to 2,314,016
_2108
PfGW456L13_2109 - FIG004453: protein YceG like, at 2,314,020 to 2,315,252
_2109
Position (kb)
2311
2312
2313
2314 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.472 kb on + strand at 2311.472 kb on + strand at 2311.485 kb on + strand at 2311.485 kb on + strand at 2311.485 kb on + strand at 2311.485 kb on + strand at 2311.491 kb on + strand at 2311.491 kb on + strand at 2311.553 kb on + strand at 2311.553 kb on + strand at 2311.555 kb on + strand at 2311.561 kb on + strand at 2311.561 kb on + strand at 2311.845 kb on + strand at 2311.848 kb on + strand at 2311.915 kb on + strand at 2311.976 kb on + strand at 2311.976 kb on + strand at 2311.992 kb on + strand at 2311.992 kb on + strand at 2311.993 kb on - strand at 2312.092 kb on + strand at 2312.140 kb on + strand, within PfGW456L13_2107 at 2312.140 kb on + strand, within PfGW456L13_2107 at 2312.141 kb on - strand, within PfGW456L13_2107 at 2312.379 kb on + strand, within PfGW456L13_2107 at 2312.428 kb on + strand, within PfGW456L13_2107 at 2312.428 kb on + strand, within PfGW456L13_2107 at 2312.429 kb on - strand, within PfGW456L13_2107 at 2312.448 kb on + strand, within PfGW456L13_2107 at 2312.449 kb on - strand, within PfGW456L13_2107 at 2312.494 kb on + strand, within PfGW456L13_2107 at 2312.494 kb on + strand, within PfGW456L13_2107 at 2312.648 kb on + strand, within PfGW456L13_2107 at 2312.648 kb on + strand, within PfGW456L13_2107 at 2312.676 kb on - strand, within PfGW456L13_2107 at 2312.719 kb on + strand, within PfGW456L13_2107 at 2312.719 kb on + strand, within PfGW456L13_2107 at 2312.939 kb on - strand, within PfGW456L13_2107 at 2313.264 kb on + strand at 2313.265 kb on - strand at 2313.408 kb on + strand, within PfGW456L13_2108 at 2313.408 kb on + strand, within PfGW456L13_2108 at 2313.535 kb on - strand, within PfGW456L13_2108 at 2313.604 kb on + strand, within PfGW456L13_2108 at 2313.814 kb on + strand, within PfGW456L13_2108 at 2313.814 kb on + strand, within PfGW456L13_2108 at 2313.815 kb on - strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.939 kb on + strand at 2313.939 kb on + strand at 2314.017 kb on + strand at 2314.017 kb on + strand at 2314.017 kb on + strand at 2314.028 kb on + strand at 2314.114 kb on + strand at 2314.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,311,406 + +0.6 2,311,406 + +0.0 2,311,406 + -1.5 2,311,406 + -0.3 2,311,406 + +0.7 2,311,406 + -0.2 2,311,406 + -1.1 2,311,406 + -0.7 2,311,406 + -0.6 2,311,406 + +0.1 2,311,406 + +0.7 2,311,406 + +0.8 2,311,406 + +0.4 2,311,412 + -0.3 2,311,412 + -0.2 2,311,412 + -0.3 2,311,412 + +0.6 2,311,412 + -1.4 2,311,412 + +1.0 2,311,449 + -0.3 2,311,449 + +0.2 2,311,449 + -0.8 2,311,449 + -3.0 2,311,449 + +0.4 2,311,449 + +0.0 2,311,472 + -0.0 2,311,472 + +0.7 2,311,485 + -0.2 2,311,485 + -0.6 2,311,485 + +0.1 2,311,485 + -0.1 2,311,491 + +0.4 2,311,491 + -0.1 2,311,553 + +1.4 2,311,553 + +0.7 2,311,555 + -0.4 2,311,561 + +0.5 2,311,561 + +0.9 2,311,845 + -1.6 2,311,848 + -0.9 2,311,915 + +0.6 2,311,976 + +0.1 2,311,976 + -0.3 2,311,992 + +0.1 2,311,992 + -1.0 2,311,993 - -0.3 2,312,092 + +1.7 2,312,140 + PfGW456L13_2107 0.12 +0.4 2,312,140 + PfGW456L13_2107 0.12 -1.3 2,312,141 - PfGW456L13_2107 0.12 -1.1 2,312,379 + PfGW456L13_2107 0.32 -0.3 2,312,428 + PfGW456L13_2107 0.36 -1.4 2,312,428 + PfGW456L13_2107 0.36 -1.7 2,312,429 - PfGW456L13_2107 0.36 -0.9 2,312,448 + PfGW456L13_2107 0.38 -1.3 2,312,449 - PfGW456L13_2107 0.38 -1.6 2,312,494 + PfGW456L13_2107 0.41 -1.6 2,312,494 + PfGW456L13_2107 0.41 +0.6 2,312,648 + PfGW456L13_2107 0.54 -0.9 2,312,648 + PfGW456L13_2107 0.54 +1.1 2,312,676 - PfGW456L13_2107 0.56 -2.7 2,312,719 + PfGW456L13_2107 0.60 -0.4 2,312,719 + PfGW456L13_2107 0.60 +1.1 2,312,939 - PfGW456L13_2107 0.78 -0.3 2,313,264 + -0.4 2,313,265 - +2.3 2,313,408 + PfGW456L13_2108 0.25 +0.5 2,313,408 + PfGW456L13_2108 0.25 +0.5 2,313,535 - PfGW456L13_2108 0.41 -0.6 2,313,604 + PfGW456L13_2108 0.49 +1.5 2,313,814 + PfGW456L13_2108 0.75 -0.7 2,313,814 + PfGW456L13_2108 0.75 +1.1 2,313,815 - PfGW456L13_2108 0.75 +0.1 2,313,915 + PfGW456L13_2108 0.88 -0.1 2,313,915 + PfGW456L13_2108 0.88 +0.9 2,313,915 + PfGW456L13_2108 0.88 +1.7 2,313,915 + PfGW456L13_2108 0.88 +0.3 2,313,915 + PfGW456L13_2108 0.88 -0.2 2,313,915 + PfGW456L13_2108 0.88 -0.1 2,313,916 - PfGW456L13_2108 0.88 +1.4 2,313,916 - PfGW456L13_2108 0.88 -1.4 2,313,916 - PfGW456L13_2108 0.88 +0.1 2,313,916 - PfGW456L13_2108 0.88 -1.3 2,313,916 - PfGW456L13_2108 0.88 +1.3 2,313,916 - PfGW456L13_2108 0.88 +1.5 2,313,916 - PfGW456L13_2108 0.88 -0.4 2,313,939 + +0.2 2,313,939 + +0.6 2,314,017 + -0.7 2,314,017 + -0.1 2,314,017 + +0.2 2,314,028 + -1.2 2,314,114 + +0.2 2,314,130 + +0.8
Or see this region's nucleotide sequence