Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2107

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2105 and PfGW456L13_2106 are separated by 196 nucleotidesPfGW456L13_2106 and PfGW456L13_2107 are separated by 145 nucleotidesPfGW456L13_2107 and PfGW456L13_2108 overlap by 1 nucleotidesPfGW456L13_2108 and PfGW456L13_2109 are separated by 3 nucleotides PfGW456L13_2105 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,310,674 to 2,311,414 _2105 PfGW456L13_2106 - Acyl carrier protein, at 2,311,611 to 2,311,847 _2106 PfGW456L13_2107 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 2,311,993 to 2,313,201 _2107 PfGW456L13_2108 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 2,313,201 to 2,314,016 _2108 PfGW456L13_2109 - FIG004453: protein YceG like, at 2,314,020 to 2,315,252 _2109 Position (kb) 2311 2312 2313 2314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.472 kb on + strandat 2311.472 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.491 kb on + strandat 2311.491 kb on + strandat 2311.553 kb on + strandat 2311.553 kb on + strandat 2311.555 kb on + strandat 2311.561 kb on + strandat 2311.561 kb on + strandat 2311.845 kb on + strandat 2311.848 kb on + strandat 2311.915 kb on + strandat 2311.976 kb on + strandat 2311.976 kb on + strandat 2311.992 kb on + strandat 2311.992 kb on + strandat 2311.993 kb on - strandat 2312.092 kb on + strandat 2312.140 kb on + strand, within PfGW456L13_2107at 2312.140 kb on + strand, within PfGW456L13_2107at 2312.141 kb on - strand, within PfGW456L13_2107at 2312.379 kb on + strand, within PfGW456L13_2107at 2312.428 kb on + strand, within PfGW456L13_2107at 2312.428 kb on + strand, within PfGW456L13_2107at 2312.429 kb on - strand, within PfGW456L13_2107at 2312.448 kb on + strand, within PfGW456L13_2107at 2312.449 kb on - strand, within PfGW456L13_2107at 2312.494 kb on + strand, within PfGW456L13_2107at 2312.494 kb on + strand, within PfGW456L13_2107at 2312.648 kb on + strand, within PfGW456L13_2107at 2312.648 kb on + strand, within PfGW456L13_2107at 2312.676 kb on - strand, within PfGW456L13_2107at 2312.719 kb on + strand, within PfGW456L13_2107at 2312.719 kb on + strand, within PfGW456L13_2107at 2312.939 kb on - strand, within PfGW456L13_2107at 2313.264 kb on + strandat 2313.265 kb on - strandat 2313.408 kb on + strand, within PfGW456L13_2108at 2313.408 kb on + strand, within PfGW456L13_2108at 2313.535 kb on - strand, within PfGW456L13_2108at 2313.604 kb on + strand, within PfGW456L13_2108at 2313.814 kb on + strand, within PfGW456L13_2108at 2313.814 kb on + strand, within PfGW456L13_2108at 2313.815 kb on - strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.915 kb on + strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.916 kb on - strand, within PfGW456L13_2108at 2313.939 kb on + strandat 2313.939 kb on + strandat 2314.017 kb on + strandat 2314.017 kb on + strandat 2314.017 kb on + strandat 2314.028 kb on + strandat 2314.114 kb on + strandat 2314.130 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,311,406 + +0.6
2,311,406 + +0.0
2,311,406 + -1.5
2,311,406 + -0.3
2,311,406 + +0.7
2,311,406 + -0.2
2,311,406 + -1.1
2,311,406 + -0.7
2,311,406 + -0.6
2,311,406 + +0.1
2,311,406 + +0.7
2,311,406 + +0.8
2,311,406 + +0.4
2,311,412 + -0.3
2,311,412 + -0.2
2,311,412 + -0.3
2,311,412 + +0.6
2,311,412 + -1.4
2,311,412 + +1.0
2,311,449 + -0.3
2,311,449 + +0.2
2,311,449 + -0.8
2,311,449 + -3.0
2,311,449 + +0.4
2,311,449 + +0.0
2,311,472 + -0.0
2,311,472 + +0.7
2,311,485 + -0.2
2,311,485 + -0.6
2,311,485 + +0.1
2,311,485 + -0.1
2,311,491 + +0.4
2,311,491 + -0.1
2,311,553 + +1.4
2,311,553 + +0.7
2,311,555 + -0.4
2,311,561 + +0.5
2,311,561 + +0.9
2,311,845 + -1.6
2,311,848 + -0.9
2,311,915 + +0.6
2,311,976 + +0.1
2,311,976 + -0.3
2,311,992 + +0.1
2,311,992 + -1.0
2,311,993 - -0.3
2,312,092 + +1.7
2,312,140 + PfGW456L13_2107 0.12 +0.4
2,312,140 + PfGW456L13_2107 0.12 -1.3
2,312,141 - PfGW456L13_2107 0.12 -1.1
2,312,379 + PfGW456L13_2107 0.32 -0.3
2,312,428 + PfGW456L13_2107 0.36 -1.4
2,312,428 + PfGW456L13_2107 0.36 -1.7
2,312,429 - PfGW456L13_2107 0.36 -0.9
2,312,448 + PfGW456L13_2107 0.38 -1.3
2,312,449 - PfGW456L13_2107 0.38 -1.6
2,312,494 + PfGW456L13_2107 0.41 -1.6
2,312,494 + PfGW456L13_2107 0.41 +0.6
2,312,648 + PfGW456L13_2107 0.54 -0.9
2,312,648 + PfGW456L13_2107 0.54 +1.1
2,312,676 - PfGW456L13_2107 0.56 -2.7
2,312,719 + PfGW456L13_2107 0.60 -0.4
2,312,719 + PfGW456L13_2107 0.60 +1.1
2,312,939 - PfGW456L13_2107 0.78 -0.3
2,313,264 + -0.4
2,313,265 - +2.3
2,313,408 + PfGW456L13_2108 0.25 +0.5
2,313,408 + PfGW456L13_2108 0.25 +0.5
2,313,535 - PfGW456L13_2108 0.41 -0.6
2,313,604 + PfGW456L13_2108 0.49 +1.5
2,313,814 + PfGW456L13_2108 0.75 -0.7
2,313,814 + PfGW456L13_2108 0.75 +1.1
2,313,815 - PfGW456L13_2108 0.75 +0.1
2,313,915 + PfGW456L13_2108 0.88 -0.1
2,313,915 + PfGW456L13_2108 0.88 +0.9
2,313,915 + PfGW456L13_2108 0.88 +1.7
2,313,915 + PfGW456L13_2108 0.88 +0.3
2,313,915 + PfGW456L13_2108 0.88 -0.2
2,313,915 + PfGW456L13_2108 0.88 -0.1
2,313,916 - PfGW456L13_2108 0.88 +1.4
2,313,916 - PfGW456L13_2108 0.88 -1.4
2,313,916 - PfGW456L13_2108 0.88 +0.1
2,313,916 - PfGW456L13_2108 0.88 -1.3
2,313,916 - PfGW456L13_2108 0.88 +1.3
2,313,916 - PfGW456L13_2108 0.88 +1.5
2,313,916 - PfGW456L13_2108 0.88 -0.4
2,313,939 + +0.2
2,313,939 + +0.6
2,314,017 + -0.7
2,314,017 + -0.1
2,314,017 + +0.2
2,314,028 + -1.2
2,314,114 + +0.2
2,314,130 + +0.8

Or see this region's nucleotide sequence