Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1575

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1574 and PfGW456L13_1575 are separated by 22 nucleotidesPfGW456L13_1575 and PfGW456L13_1576 are separated by 169 nucleotidesPfGW456L13_1576 and PfGW456L13_1577 are separated by 142 nucleotides PfGW456L13_1574 - GTP-binding and nucleic acid-binding protein YchF, at 1,738,595 to 1,739,695 _1574 PfGW456L13_1575 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 1,739,718 to 1,740,302 _1575 PfGW456L13_1576 - LSU ribosomal protein L25p, at 1,740,472 to 1,741,071 _1576 PfGW456L13_1577 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 1,741,214 to 1,742,155 _1577 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -2 -1 0 1 2at 1738.842 kb on + strand, within PfGW456L13_1574at 1738.842 kb on + strand, within PfGW456L13_1574at 1738.842 kb on + strand, within PfGW456L13_1574at 1739.025 kb on - strand, within PfGW456L13_1574at 1739.025 kb on - strand, within PfGW456L13_1574at 1739.079 kb on + strand, within PfGW456L13_1574at 1739.079 kb on + strand, within PfGW456L13_1574at 1739.080 kb on - strand, within PfGW456L13_1574at 1739.080 kb on - strand, within PfGW456L13_1574at 1739.080 kb on - strand, within PfGW456L13_1574at 1739.080 kb on - strand, within PfGW456L13_1574at 1739.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,738,842 + PfGW456L13_1574 0.22 -2.1
1,738,842 + PfGW456L13_1574 0.22 -1.2
1,738,842 + PfGW456L13_1574 0.22 -0.0
1,739,025 - PfGW456L13_1574 0.39 -1.0
1,739,025 - PfGW456L13_1574 0.39 -2.0
1,739,079 + PfGW456L13_1574 0.44 +2.0
1,739,079 + PfGW456L13_1574 0.44 -0.4
1,739,080 - PfGW456L13_1574 0.44 +0.6
1,739,080 - PfGW456L13_1574 0.44 -0.8
1,739,080 - PfGW456L13_1574 0.44 -0.0
1,739,080 - PfGW456L13_1574 0.44 -0.1
1,739,712 + -1.2

Or see this region's nucleotide sequence