Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_103

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_102 and PfGW456L13_103 are separated by 96 nucleotidesPfGW456L13_103 and PfGW456L13_104 are separated by 0 nucleotidesPfGW456L13_104 and PfGW456L13_105 are separated by 121 nucleotides PfGW456L13_102 - Lipase precursor (EC 3.1.1.3), at 120,627 to 121,517 _102 PfGW456L13_103 - Quaternary ammonium compound-resistance protein SugE, at 121,614 to 121,919 _103 PfGW456L13_104 - FMN-dependent NADH-azoreductase, at 121,920 to 122,558 _104 PfGW456L13_105 - Glycine cleavage system transcriptional activator, at 122,680 to 123,582 _105 Position (kb) 121 122Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 120.618 kb on + strandat 120.618 kb on + strandat 120.619 kb on - strandat 120.629 kb on - strandat 120.670 kb on - strandat 120.670 kb on - strandat 120.779 kb on - strand, within PfGW456L13_102at 120.828 kb on - strand, within PfGW456L13_102at 120.828 kb on - strand, within PfGW456L13_102at 120.828 kb on - strand, within PfGW456L13_102at 120.828 kb on - strand, within PfGW456L13_102at 120.916 kb on + strand, within PfGW456L13_102at 120.916 kb on + strand, within PfGW456L13_102at 120.916 kb on + strand, within PfGW456L13_102at 120.916 kb on + strand, within PfGW456L13_102at 120.916 kb on + strand, within PfGW456L13_102at 120.917 kb on - strand, within PfGW456L13_102at 120.917 kb on - strand, within PfGW456L13_102at 120.917 kb on - strand, within PfGW456L13_102at 120.917 kb on - strand, within PfGW456L13_102at 120.920 kb on - strand, within PfGW456L13_102at 121.166 kb on - strand, within PfGW456L13_102at 121.246 kb on + strand, within PfGW456L13_102at 121.271 kb on + strand, within PfGW456L13_102at 121.272 kb on - strand, within PfGW456L13_102at 121.272 kb on - strand, within PfGW456L13_102at 121.335 kb on + strand, within PfGW456L13_102at 121.335 kb on + strand, within PfGW456L13_102at 121.335 kb on + strand, within PfGW456L13_102at 121.335 kb on + strand, within PfGW456L13_102at 121.336 kb on - strand, within PfGW456L13_102at 121.336 kb on - strand, within PfGW456L13_102at 121.365 kb on - strand, within PfGW456L13_102at 121.435 kb on + strandat 121.441 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.602 kb on - strandat 121.615 kb on + strandat 121.626 kb on + strandat 121.626 kb on + strandat 121.626 kb on + strandat 121.627 kb on - strandat 121.627 kb on - strandat 121.627 kb on - strandat 121.789 kb on + strand, within PfGW456L13_103at 121.789 kb on + strand, within PfGW456L13_103at 121.790 kb on - strand, within PfGW456L13_103at 121.813 kb on - strand, within PfGW456L13_103at 121.855 kb on + strand, within PfGW456L13_103at 121.856 kb on - strand, within PfGW456L13_103at 121.856 kb on - strand, within PfGW456L13_103at 121.856 kb on - strand, within PfGW456L13_103at 121.921 kb on + strandat 121.921 kb on + strandat 121.921 kb on + strandat 121.921 kb on + strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.922 kb on - strandat 121.922 kb on - strandat 122.054 kb on + strand, within PfGW456L13_104at 122.054 kb on + strand, within PfGW456L13_104at 122.055 kb on - strand, within PfGW456L13_104at 122.062 kb on - strand, within PfGW456L13_104at 122.062 kb on - strand, within PfGW456L13_104at 122.062 kb on - strand, within PfGW456L13_104at 122.168 kb on - strand, within PfGW456L13_104at 122.552 kb on + strandat 122.615 kb on + strandat 122.615 kb on + strandat 122.616 kb on - strandat 122.616 kb on - strandat 122.616 kb on - strandat 122.616 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
120,618 + +0.2
120,618 + +0.6
120,619 - +1.1
120,629 - +1.4
120,670 - +0.1
120,670 - +4.1
120,779 - PfGW456L13_102 0.17 -1.7
120,828 - PfGW456L13_102 0.23 +0.7
120,828 - PfGW456L13_102 0.23 +0.1
120,828 - PfGW456L13_102 0.23 +0.0
120,828 - PfGW456L13_102 0.23 +1.1
120,916 + PfGW456L13_102 0.32 -1.6
120,916 + PfGW456L13_102 0.32 +0.6
120,916 + PfGW456L13_102 0.32 -0.8
120,916 + PfGW456L13_102 0.32 +1.2
120,916 + PfGW456L13_102 0.32 -0.3
120,917 - PfGW456L13_102 0.33 +0.6
120,917 - PfGW456L13_102 0.33 +1.9
120,917 - PfGW456L13_102 0.33 +1.1
120,917 - PfGW456L13_102 0.33 +0.1
120,920 - PfGW456L13_102 0.33 +0.4
121,166 - PfGW456L13_102 0.60 -0.2
121,246 + PfGW456L13_102 0.69 +0.3
121,271 + PfGW456L13_102 0.72 +0.9
121,272 - PfGW456L13_102 0.72 +0.9
121,272 - PfGW456L13_102 0.72 +0.2
121,335 + PfGW456L13_102 0.79 +0.2
121,335 + PfGW456L13_102 0.79 +0.4
121,335 + PfGW456L13_102 0.79 +0.3
121,335 + PfGW456L13_102 0.79 +0.5
121,336 - PfGW456L13_102 0.80 +0.1
121,336 - PfGW456L13_102 0.80 +0.4
121,365 - PfGW456L13_102 0.83 -1.0
121,435 + -0.7
121,441 + -1.1
121,601 + -0.0
121,601 + -0.0
121,601 + +0.3
121,601 + +0.4
121,601 + +0.8
121,601 + +0.5
121,601 + +0.5
121,601 + +0.1
121,602 - -1.7
121,602 - -1.2
121,602 - +0.4
121,602 - -1.5
121,602 - +0.2
121,602 - +0.5
121,602 - -0.9
121,602 - -0.6
121,602 - +0.6
121,602 - -0.9
121,602 - -0.1
121,602 - -1.8
121,602 - +0.2
121,602 - +0.5
121,602 - +0.4
121,602 - -0.3
121,615 + +0.6
121,626 + -0.0
121,626 + +0.7
121,626 + -0.9
121,627 - -0.4
121,627 - -0.6
121,627 - -0.3
121,789 + PfGW456L13_103 0.57 +0.7
121,789 + PfGW456L13_103 0.57 -0.2
121,790 - PfGW456L13_103 0.58 -0.6
121,813 - PfGW456L13_103 0.65 +0.8
121,855 + PfGW456L13_103 0.79 +0.6
121,856 - PfGW456L13_103 0.79 -0.2
121,856 - PfGW456L13_103 0.79 -1.5
121,856 - PfGW456L13_103 0.79 -1.2
121,921 + +1.0
121,921 + -0.4
121,921 + +0.7
121,921 + -0.4
121,922 - +0.8
121,922 - +0.4
121,922 - +0.4
121,922 - +0.1
121,922 - +0.6
121,922 - +1.1
122,054 + PfGW456L13_104 0.21 -0.4
122,054 + PfGW456L13_104 0.21 +0.5
122,055 - PfGW456L13_104 0.21 +0.4
122,062 - PfGW456L13_104 0.22 +1.2
122,062 - PfGW456L13_104 0.22 +0.1
122,062 - PfGW456L13_104 0.22 +0.3
122,168 - PfGW456L13_104 0.39 +0.4
122,552 + +0.1
122,615 + -0.6
122,615 + -0.1
122,616 - -0.8
122,616 - +1.3
122,616 - +0.6
122,616 - -0.1

Or see this region's nucleotide sequence