Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_102 and PfGW456L13_103 are separated by 96 nucleotides PfGW456L13_103 and PfGW456L13_104 are separated by 0 nucleotides PfGW456L13_104 and PfGW456L13_105 are separated by 121 nucleotides
PfGW456L13_102 - Lipase precursor (EC 3.1.1.3), at 120,627 to 121,517
_102
PfGW456L13_103 - Quaternary ammonium compound-resistance protein SugE, at 121,614 to 121,919
_103
PfGW456L13_104 - FMN-dependent NADH-azoreductase, at 121,920 to 122,558
_104
PfGW456L13_105 - Glycine cleavage system transcriptional activator, at 122,680 to 123,582
_105
Position (kb)
121
122 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 120.618 kb on + strand at 120.618 kb on + strand at 120.619 kb on - strand at 120.629 kb on - strand at 120.670 kb on - strand at 120.670 kb on - strand at 120.779 kb on - strand, within PfGW456L13_102 at 120.828 kb on - strand, within PfGW456L13_102 at 120.828 kb on - strand, within PfGW456L13_102 at 120.828 kb on - strand, within PfGW456L13_102 at 120.828 kb on - strand, within PfGW456L13_102 at 120.916 kb on + strand, within PfGW456L13_102 at 120.916 kb on + strand, within PfGW456L13_102 at 120.916 kb on + strand, within PfGW456L13_102 at 120.916 kb on + strand, within PfGW456L13_102 at 120.916 kb on + strand, within PfGW456L13_102 at 120.917 kb on - strand, within PfGW456L13_102 at 120.917 kb on - strand, within PfGW456L13_102 at 120.917 kb on - strand, within PfGW456L13_102 at 120.917 kb on - strand, within PfGW456L13_102 at 120.920 kb on - strand, within PfGW456L13_102 at 121.166 kb on - strand, within PfGW456L13_102 at 121.246 kb on + strand, within PfGW456L13_102 at 121.271 kb on + strand, within PfGW456L13_102 at 121.272 kb on - strand, within PfGW456L13_102 at 121.272 kb on - strand, within PfGW456L13_102 at 121.335 kb on + strand, within PfGW456L13_102 at 121.335 kb on + strand, within PfGW456L13_102 at 121.335 kb on + strand, within PfGW456L13_102 at 121.335 kb on + strand, within PfGW456L13_102 at 121.336 kb on - strand, within PfGW456L13_102 at 121.336 kb on - strand, within PfGW456L13_102 at 121.365 kb on - strand, within PfGW456L13_102 at 121.435 kb on + strand at 121.441 kb on + strand at 121.601 kb on + strand at 121.601 kb on + strand at 121.601 kb on + strand at 121.601 kb on + strand at 121.601 kb on + strand at 121.601 kb on + strand at 121.601 kb on + strand at 121.601 kb on + strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.602 kb on - strand at 121.615 kb on + strand at 121.626 kb on + strand at 121.626 kb on + strand at 121.626 kb on + strand at 121.627 kb on - strand at 121.627 kb on - strand at 121.627 kb on - strand at 121.789 kb on + strand, within PfGW456L13_103 at 121.789 kb on + strand, within PfGW456L13_103 at 121.790 kb on - strand, within PfGW456L13_103 at 121.813 kb on - strand, within PfGW456L13_103 at 121.855 kb on + strand, within PfGW456L13_103 at 121.856 kb on - strand, within PfGW456L13_103 at 121.856 kb on - strand, within PfGW456L13_103 at 121.856 kb on - strand, within PfGW456L13_103 at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 122.054 kb on + strand, within PfGW456L13_104 at 122.054 kb on + strand, within PfGW456L13_104 at 122.055 kb on - strand, within PfGW456L13_104 at 122.062 kb on - strand, within PfGW456L13_104 at 122.062 kb on - strand, within PfGW456L13_104 at 122.062 kb on - strand, within PfGW456L13_104 at 122.168 kb on - strand, within PfGW456L13_104 at 122.552 kb on + strand at 122.615 kb on + strand at 122.615 kb on + strand at 122.616 kb on - strand at 122.616 kb on - strand at 122.616 kb on - strand at 122.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 120,618 + +0.2 120,618 + +0.6 120,619 - +1.1 120,629 - +1.4 120,670 - +0.1 120,670 - +4.1 120,779 - PfGW456L13_102 0.17 -1.7 120,828 - PfGW456L13_102 0.23 +0.7 120,828 - PfGW456L13_102 0.23 +0.1 120,828 - PfGW456L13_102 0.23 +0.0 120,828 - PfGW456L13_102 0.23 +1.1 120,916 + PfGW456L13_102 0.32 -1.6 120,916 + PfGW456L13_102 0.32 +0.6 120,916 + PfGW456L13_102 0.32 -0.8 120,916 + PfGW456L13_102 0.32 +1.2 120,916 + PfGW456L13_102 0.32 -0.3 120,917 - PfGW456L13_102 0.33 +0.6 120,917 - PfGW456L13_102 0.33 +1.9 120,917 - PfGW456L13_102 0.33 +1.1 120,917 - PfGW456L13_102 0.33 +0.1 120,920 - PfGW456L13_102 0.33 +0.4 121,166 - PfGW456L13_102 0.60 -0.2 121,246 + PfGW456L13_102 0.69 +0.3 121,271 + PfGW456L13_102 0.72 +0.9 121,272 - PfGW456L13_102 0.72 +0.9 121,272 - PfGW456L13_102 0.72 +0.2 121,335 + PfGW456L13_102 0.79 +0.2 121,335 + PfGW456L13_102 0.79 +0.4 121,335 + PfGW456L13_102 0.79 +0.3 121,335 + PfGW456L13_102 0.79 +0.5 121,336 - PfGW456L13_102 0.80 +0.1 121,336 - PfGW456L13_102 0.80 +0.4 121,365 - PfGW456L13_102 0.83 -1.0 121,435 + -0.7 121,441 + -1.1 121,601 + -0.0 121,601 + -0.0 121,601 + +0.3 121,601 + +0.4 121,601 + +0.8 121,601 + +0.5 121,601 + +0.5 121,601 + +0.1 121,602 - -1.7 121,602 - -1.2 121,602 - +0.4 121,602 - -1.5 121,602 - +0.2 121,602 - +0.5 121,602 - -0.9 121,602 - -0.6 121,602 - +0.6 121,602 - -0.9 121,602 - -0.1 121,602 - -1.8 121,602 - +0.2 121,602 - +0.5 121,602 - +0.4 121,602 - -0.3 121,615 + +0.6 121,626 + -0.0 121,626 + +0.7 121,626 + -0.9 121,627 - -0.4 121,627 - -0.6 121,627 - -0.3 121,789 + PfGW456L13_103 0.57 +0.7 121,789 + PfGW456L13_103 0.57 -0.2 121,790 - PfGW456L13_103 0.58 -0.6 121,813 - PfGW456L13_103 0.65 +0.8 121,855 + PfGW456L13_103 0.79 +0.6 121,856 - PfGW456L13_103 0.79 -0.2 121,856 - PfGW456L13_103 0.79 -1.5 121,856 - PfGW456L13_103 0.79 -1.2 121,921 + +1.0 121,921 + -0.4 121,921 + +0.7 121,921 + -0.4 121,922 - +0.8 121,922 - +0.4 121,922 - +0.4 121,922 - +0.1 121,922 - +0.6 121,922 - +1.1 122,054 + PfGW456L13_104 0.21 -0.4 122,054 + PfGW456L13_104 0.21 +0.5 122,055 - PfGW456L13_104 0.21 +0.4 122,062 - PfGW456L13_104 0.22 +1.2 122,062 - PfGW456L13_104 0.22 +0.1 122,062 - PfGW456L13_104 0.22 +0.3 122,168 - PfGW456L13_104 0.39 +0.4 122,552 + +0.1 122,615 + -0.6 122,615 + -0.1 122,616 - -0.8 122,616 - +1.3 122,616 - +0.6 122,616 - -0.1
Or see this region's nucleotide sequence