Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1191 and B158DRAFT_1192 are separated by 131 nucleotides B158DRAFT_1192 and B158DRAFT_1193 are separated by 3 nucleotides
B158DRAFT_1191: B158DRAFT_1191 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 1,230,657 to 1,231,277
_1191
B158DRAFT_1192: B158DRAFT_1192 - DNA recombination-dependent growth factor C, at 1,231,409 to 1,232,377
_1192
B158DRAFT_1193: B158DRAFT_1193 - hypothetical protein, at 1,232,381 to 1,233,805
_1193
Position (kb)
1231
1232
1233 Strain fitness (log2 ratio)
-2
-1
0
1 at 1230.414 kb on - strand at 1230.416 kb on + strand at 1230.498 kb on + strand at 1230.508 kb on - strand at 1230.525 kb on + strand at 1230.542 kb on + strand at 1230.601 kb on - strand at 1230.645 kb on + strand at 1230.653 kb on - strand at 1230.653 kb on - strand at 1230.653 kb on - strand at 1230.680 kb on - strand at 1230.698 kb on - strand at 1230.792 kb on + strand, within B158DRAFT_1191 at 1230.818 kb on - strand, within B158DRAFT_1191 at 1230.865 kb on - strand, within B158DRAFT_1191 at 1230.865 kb on - strand, within B158DRAFT_1191 at 1230.865 kb on - strand, within B158DRAFT_1191 at 1230.888 kb on - strand, within B158DRAFT_1191 at 1230.915 kb on - strand, within B158DRAFT_1191 at 1230.922 kb on - strand, within B158DRAFT_1191 at 1231.078 kb on - strand, within B158DRAFT_1191 at 1231.102 kb on + strand, within B158DRAFT_1191 at 1231.110 kb on - strand, within B158DRAFT_1191 at 1231.110 kb on - strand, within B158DRAFT_1191 at 1231.110 kb on - strand, within B158DRAFT_1191 at 1231.110 kb on - strand, within B158DRAFT_1191 at 1231.131 kb on + strand, within B158DRAFT_1191 at 1231.198 kb on + strand, within B158DRAFT_1191 at 1231.198 kb on + strand, within B158DRAFT_1191 at 1231.198 kb on + strand, within B158DRAFT_1191 at 1231.198 kb on + strand, within B158DRAFT_1191 at 1231.198 kb on + strand, within B158DRAFT_1191 at 1231.198 kb on + strand, within B158DRAFT_1191 at 1231.205 kb on - strand, within B158DRAFT_1191 at 1231.206 kb on - strand, within B158DRAFT_1191 at 1231.206 kb on - strand, within B158DRAFT_1191 at 1231.206 kb on - strand, within B158DRAFT_1191 at 1231.206 kb on - strand, within B158DRAFT_1191 at 1231.206 kb on - strand, within B158DRAFT_1191 at 1231.206 kb on - strand, within B158DRAFT_1191 at 1231.223 kb on + strand at 1231.223 kb on + strand at 1231.223 kb on + strand at 1231.263 kb on + strand at 1231.263 kb on + strand at 1231.398 kb on - strand at 1231.398 kb on - strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.466 kb on + strand at 1231.501 kb on + strand at 1231.509 kb on - strand, within B158DRAFT_1192 at 1231.509 kb on - strand, within B158DRAFT_1192 at 1231.509 kb on - strand, within B158DRAFT_1192 at 1231.512 kb on - strand, within B158DRAFT_1192 at 1231.522 kb on - strand, within B158DRAFT_1192 at 1231.522 kb on - strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.532 kb on - strand, within B158DRAFT_1192 at 1231.532 kb on - strand, within B158DRAFT_1192 at 1231.534 kb on - strand, within B158DRAFT_1192 at 1231.534 kb on - strand, within B158DRAFT_1192 at 1231.582 kb on + strand, within B158DRAFT_1192 at 1231.593 kb on + strand, within B158DRAFT_1192 at 1231.601 kb on - strand, within B158DRAFT_1192 at 1231.631 kb on + strand, within B158DRAFT_1192 at 1231.639 kb on - strand, within B158DRAFT_1192 at 1231.639 kb on - strand, within B158DRAFT_1192 at 1231.654 kb on - strand, within B158DRAFT_1192 at 1231.654 kb on - strand, within B158DRAFT_1192 at 1231.658 kb on + strand, within B158DRAFT_1192 at 1231.658 kb on + strand, within B158DRAFT_1192 at 1231.666 kb on - strand, within B158DRAFT_1192 at 1231.716 kb on + strand, within B158DRAFT_1192 at 1231.716 kb on + strand, within B158DRAFT_1192 at 1231.724 kb on - strand, within B158DRAFT_1192 at 1231.724 kb on - strand, within B158DRAFT_1192 at 1231.744 kb on + strand, within B158DRAFT_1192 at 1231.744 kb on + strand, within B158DRAFT_1192 at 1231.763 kb on + strand, within B158DRAFT_1192 at 1231.774 kb on + strand, within B158DRAFT_1192 at 1231.787 kb on - strand, within B158DRAFT_1192 at 1231.807 kb on - strand, within B158DRAFT_1192 at 1231.810 kb on + strand, within B158DRAFT_1192 at 1231.816 kb on + strand, within B158DRAFT_1192 at 1231.831 kb on - strand, within B158DRAFT_1192 at 1231.833 kb on + strand, within B158DRAFT_1192 at 1231.852 kb on - strand, within B158DRAFT_1192 at 1231.863 kb on - strand, within B158DRAFT_1192 at 1231.892 kb on + strand, within B158DRAFT_1192 at 1231.914 kb on + strand, within B158DRAFT_1192 at 1231.914 kb on + strand, within B158DRAFT_1192 at 1231.914 kb on + strand, within B158DRAFT_1192 at 1231.922 kb on - strand, within B158DRAFT_1192 at 1231.922 kb on - strand, within B158DRAFT_1192 at 1231.938 kb on - strand, within B158DRAFT_1192 at 1231.961 kb on + strand, within B158DRAFT_1192 at 1231.970 kb on + strand, within B158DRAFT_1192 at 1231.978 kb on - strand, within B158DRAFT_1192 at 1231.983 kb on - strand, within B158DRAFT_1192 at 1231.999 kb on - strand, within B158DRAFT_1192 at 1232.004 kb on + strand, within B158DRAFT_1192 at 1232.014 kb on + strand, within B158DRAFT_1192 at 1232.014 kb on + strand, within B158DRAFT_1192 at 1232.022 kb on - strand, within B158DRAFT_1192 at 1232.040 kb on - strand, within B158DRAFT_1192 at 1232.103 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.111 kb on + strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.173 kb on + strand, within B158DRAFT_1192 at 1232.207 kb on - strand, within B158DRAFT_1192 at 1232.326 kb on + strand at 1232.326 kb on + strand at 1232.326 kb on + strand at 1232.338 kb on + strand at 1232.392 kb on + strand at 1232.558 kb on - strand, within B158DRAFT_1193 at 1232.729 kb on - strand, within B158DRAFT_1193 at 1232.883 kb on - strand, within B158DRAFT_1193
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,230,414 - -0.2 1,230,416 + +0.3 1,230,498 + +0.1 1,230,508 - -0.1 1,230,525 + -0.0 1,230,542 + -0.1 1,230,601 - +0.0 1,230,645 + +0.1 1,230,653 - -0.3 1,230,653 - +0.3 1,230,653 - +0.5 1,230,680 - +0.5 1,230,698 - +0.0 1,230,792 + B158DRAFT_1191 0.22 -0.4 1,230,818 - B158DRAFT_1191 0.26 +0.0 1,230,865 - B158DRAFT_1191 0.33 +0.0 1,230,865 - B158DRAFT_1191 0.33 +0.1 1,230,865 - B158DRAFT_1191 0.33 -0.1 1,230,888 - B158DRAFT_1191 0.37 -0.2 1,230,915 - B158DRAFT_1191 0.42 +0.0 1,230,922 - B158DRAFT_1191 0.43 +0.4 1,231,078 - B158DRAFT_1191 0.68 +0.2 1,231,102 + B158DRAFT_1191 0.72 -0.9 1,231,110 - B158DRAFT_1191 0.73 +0.2 1,231,110 - B158DRAFT_1191 0.73 -0.8 1,231,110 - B158DRAFT_1191 0.73 -0.2 1,231,110 - B158DRAFT_1191 0.73 +0.3 1,231,131 + B158DRAFT_1191 0.76 +1.0 1,231,198 + B158DRAFT_1191 0.87 +0.1 1,231,198 + B158DRAFT_1191 0.87 +0.8 1,231,198 + B158DRAFT_1191 0.87 +0.4 1,231,198 + B158DRAFT_1191 0.87 -1.2 1,231,198 + B158DRAFT_1191 0.87 -0.7 1,231,198 + B158DRAFT_1191 0.87 -0.4 1,231,205 - B158DRAFT_1191 0.88 +0.9 1,231,206 - B158DRAFT_1191 0.88 -0.3 1,231,206 - B158DRAFT_1191 0.88 -0.3 1,231,206 - B158DRAFT_1191 0.88 +0.2 1,231,206 - B158DRAFT_1191 0.88 -0.2 1,231,206 - B158DRAFT_1191 0.88 -0.5 1,231,206 - B158DRAFT_1191 0.88 -0.3 1,231,223 + -1.4 1,231,223 + +0.3 1,231,223 + -0.2 1,231,263 + -0.4 1,231,263 + -0.6 1,231,398 - -0.3 1,231,398 - -0.1 1,231,400 + -0.1 1,231,400 + -0.5 1,231,400 + -0.2 1,231,400 + +0.2 1,231,400 + -0.5 1,231,408 - +0.3 1,231,408 - +0.1 1,231,408 - +0.5 1,231,408 - -0.2 1,231,408 - -0.2 1,231,408 - +0.6 1,231,466 + -1.1 1,231,501 + -0.7 1,231,509 - B158DRAFT_1192 0.10 -0.3 1,231,509 - B158DRAFT_1192 0.10 -0.3 1,231,509 - B158DRAFT_1192 0.10 -0.3 1,231,512 - B158DRAFT_1192 0.11 +0.1 1,231,522 - B158DRAFT_1192 0.12 -1.0 1,231,522 - B158DRAFT_1192 0.12 +0.2 1,231,524 + B158DRAFT_1192 0.12 -0.9 1,231,524 + B158DRAFT_1192 0.12 +0.9 1,231,524 + B158DRAFT_1192 0.12 -0.5 1,231,524 + B158DRAFT_1192 0.12 +0.3 1,231,524 + B158DRAFT_1192 0.12 +0.1 1,231,532 - B158DRAFT_1192 0.13 +0.1 1,231,532 - B158DRAFT_1192 0.13 -0.6 1,231,534 - B158DRAFT_1192 0.13 -0.6 1,231,534 - B158DRAFT_1192 0.13 -0.5 1,231,582 + B158DRAFT_1192 0.18 +0.2 1,231,593 + B158DRAFT_1192 0.19 -0.6 1,231,601 - B158DRAFT_1192 0.20 -0.6 1,231,631 + B158DRAFT_1192 0.23 -0.5 1,231,639 - B158DRAFT_1192 0.24 +0.3 1,231,639 - B158DRAFT_1192 0.24 +0.2 1,231,654 - B158DRAFT_1192 0.25 -0.6 1,231,654 - B158DRAFT_1192 0.25 +0.3 1,231,658 + B158DRAFT_1192 0.26 -0.3 1,231,658 + B158DRAFT_1192 0.26 -1.2 1,231,666 - B158DRAFT_1192 0.27 +0.8 1,231,716 + B158DRAFT_1192 0.32 +0.4 1,231,716 + B158DRAFT_1192 0.32 -0.1 1,231,724 - B158DRAFT_1192 0.33 -0.2 1,231,724 - B158DRAFT_1192 0.33 +0.6 1,231,744 + B158DRAFT_1192 0.35 -0.1 1,231,744 + B158DRAFT_1192 0.35 -1.4 1,231,763 + B158DRAFT_1192 0.37 +0.5 1,231,774 + B158DRAFT_1192 0.38 -0.1 1,231,787 - B158DRAFT_1192 0.39 +0.5 1,231,807 - B158DRAFT_1192 0.41 -0.2 1,231,810 + B158DRAFT_1192 0.41 -1.1 1,231,816 + B158DRAFT_1192 0.42 -0.0 1,231,831 - B158DRAFT_1192 0.44 -0.6 1,231,833 + B158DRAFT_1192 0.44 -1.3 1,231,852 - B158DRAFT_1192 0.46 -0.8 1,231,863 - B158DRAFT_1192 0.47 -1.2 1,231,892 + B158DRAFT_1192 0.50 -0.5 1,231,914 + B158DRAFT_1192 0.52 -0.2 1,231,914 + B158DRAFT_1192 0.52 -0.6 1,231,914 + B158DRAFT_1192 0.52 +0.3 1,231,922 - B158DRAFT_1192 0.53 -0.8 1,231,922 - B158DRAFT_1192 0.53 -0.3 1,231,938 - B158DRAFT_1192 0.55 -0.3 1,231,961 + B158DRAFT_1192 0.57 -1.2 1,231,970 + B158DRAFT_1192 0.58 -0.4 1,231,978 - B158DRAFT_1192 0.59 -0.7 1,231,983 - B158DRAFT_1192 0.59 -0.4 1,231,999 - B158DRAFT_1192 0.61 -0.3 1,232,004 + B158DRAFT_1192 0.61 -0.7 1,232,014 + B158DRAFT_1192 0.62 +1.0 1,232,014 + B158DRAFT_1192 0.62 -0.3 1,232,022 - B158DRAFT_1192 0.63 -0.4 1,232,040 - B158DRAFT_1192 0.65 +0.6 1,232,103 + B158DRAFT_1192 0.72 -0.4 1,232,104 + B158DRAFT_1192 0.72 -0.1 1,232,104 + B158DRAFT_1192 0.72 +0.0 1,232,104 + B158DRAFT_1192 0.72 -0.2 1,232,104 + B158DRAFT_1192 0.72 -0.0 1,232,104 + B158DRAFT_1192 0.72 -0.4 1,232,104 + B158DRAFT_1192 0.72 -0.4 1,232,111 + B158DRAFT_1192 0.72 +0.0 1,232,112 - B158DRAFT_1192 0.73 +0.0 1,232,112 - B158DRAFT_1192 0.73 -0.7 1,232,112 - B158DRAFT_1192 0.73 -0.6 1,232,112 - B158DRAFT_1192 0.73 -0.5 1,232,112 - B158DRAFT_1192 0.73 -0.3 1,232,112 - B158DRAFT_1192 0.73 -0.0 1,232,112 - B158DRAFT_1192 0.73 +0.1 1,232,112 - B158DRAFT_1192 0.73 -0.4 1,232,112 - B158DRAFT_1192 0.73 +0.7 1,232,173 + B158DRAFT_1192 0.79 -0.4 1,232,207 - B158DRAFT_1192 0.82 -2.5 1,232,326 + -1.8 1,232,326 + -2.4 1,232,326 + -1.4 1,232,338 + +0.1 1,232,392 + -0.9 1,232,558 - B158DRAFT_1193 0.12 -1.5 1,232,729 - B158DRAFT_1193 0.24 -1.2 1,232,883 - B158DRAFT_1193 0.35 -2.7
Or see this region's nucleotide sequence