Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29105 and ABID97_RS29110 overlap by 11 nucleotides ABID97_RS29110 and ABID97_RS29115 are separated by 13 nucleotides ABID97_RS29115 and ABID97_RS29120 are separated by 109 nucleotides
ABID97_RS29105: ABID97_RS29105 - universal stress protein, at 739,951 to 740,916
_RS29105
ABID97_RS29110: ABID97_RS29110 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 740,906 to 743,155
_RS29110
ABID97_RS29115: ABID97_RS29115 - (2Fe-2S)-binding protein, at 743,169 to 743,642
_RS29115
ABID97_RS29120: ABID97_RS29120 - LysR substrate-binding domain-containing protein, at 743,752 to 744,648
_RS29120
Position (kb) 740
741
742
743
744 Strain fitness (log2 ratio) -1
0
1
2 at 740.099 kb on + strand, within ABID97_RS29105 at 740.099 kb on + strand, within ABID97_RS29105 at 740.321 kb on + strand, within ABID97_RS29105 at 740.322 kb on - strand, within ABID97_RS29105 at 740.480 kb on - strand, within ABID97_RS29105 at 740.513 kb on - strand, within ABID97_RS29105 at 740.569 kb on + strand, within ABID97_RS29105 at 740.569 kb on + strand, within ABID97_RS29105 at 740.570 kb on - strand, within ABID97_RS29105 at 740.907 kb on + strand at 740.907 kb on + strand at 740.908 kb on - strand at 741.279 kb on + strand, within ABID97_RS29110 at 741.280 kb on - strand, within ABID97_RS29110 at 741.750 kb on + strand, within ABID97_RS29110 at 741.753 kb on + strand, within ABID97_RS29110 at 741.754 kb on - strand, within ABID97_RS29110 at 741.856 kb on - strand, within ABID97_RS29110 at 742.255 kb on - strand, within ABID97_RS29110 at 742.255 kb on - strand, within ABID97_RS29110 at 742.701 kb on + strand, within ABID97_RS29110 at 742.770 kb on + strand, within ABID97_RS29110 at 743.219 kb on - strand, within ABID97_RS29115 at 743.219 kb on - strand, within ABID97_RS29115 at 743.975 kb on + strand, within ABID97_RS29120
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 740,099 + ABID97_RS29105 0.15 +0.2 740,099 + ABID97_RS29105 0.15 -0.1 740,321 + ABID97_RS29105 0.38 +2.1 740,322 - ABID97_RS29105 0.38 -0.4 740,480 - ABID97_RS29105 0.55 +1.1 740,513 - ABID97_RS29105 0.58 -0.0 740,569 + ABID97_RS29105 0.64 +0.3 740,569 + ABID97_RS29105 0.64 -0.3 740,570 - ABID97_RS29105 0.64 +0.1 740,907 + -0.2 740,907 + +1.1 740,908 - +0.3 741,279 + ABID97_RS29110 0.17 +0.1 741,280 - ABID97_RS29110 0.17 +0.7 741,750 + ABID97_RS29110 0.38 +1.1 741,753 + ABID97_RS29110 0.38 +0.1 741,754 - ABID97_RS29110 0.38 +0.4 741,856 - ABID97_RS29110 0.42 -0.0 742,255 - ABID97_RS29110 0.60 +0.1 742,255 - ABID97_RS29110 0.60 +0.1 742,701 + ABID97_RS29110 0.80 +0.2 742,770 + ABID97_RS29110 0.83 -0.2 743,219 - ABID97_RS29115 0.11 -0.2 743,219 - ABID97_RS29115 0.11 +0.4 743,975 + ABID97_RS29120 0.25 -0.1
Or see this region's nucleotide sequence