Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28635

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28630 and ABID97_RS28635 are separated by 244 nucleotidesABID97_RS28635 and ABID97_RS28640 overlap by 4 nucleotidesABID97_RS28640 and ABID97_RS28645 are separated by 29 nucleotides ABID97_RS28630: ABID97_RS28630 - AMP-binding protein, at 645,485 to 647,041 _RS28630 ABID97_RS28635: ABID97_RS28635 - IclR family transcriptional regulator, at 647,286 to 648,008 _RS28635 ABID97_RS28640: ABID97_RS28640 - PaaI family thioesterase, at 648,005 to 648,445 _RS28640 ABID97_RS28645: ABID97_RS28645 - amidohydrolase family protein, at 648,475 to 649,386 _RS28645 Position (kb) 647 648 649Strain fitness (log2 ratio) -1 0 1at 646.399 kb on - strand, within ABID97_RS28630at 646.483 kb on - strand, within ABID97_RS28630at 646.743 kb on + strand, within ABID97_RS28630at 646.743 kb on + strand, within ABID97_RS28630at 647.165 kb on + strandat 647.198 kb on - strandat 647.652 kb on + strand, within ABID97_RS28635at 647.653 kb on - strand, within ABID97_RS28635at 647.850 kb on + strand, within ABID97_RS28635

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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646,399 - ABID97_RS28630 0.59 -0.4
646,483 - ABID97_RS28630 0.64 +0.2
646,743 + ABID97_RS28630 0.81 -0.2
646,743 + ABID97_RS28630 0.81 +0.2
647,165 + -0.6
647,198 - -0.1
647,652 + ABID97_RS28635 0.51 -0.9
647,653 - ABID97_RS28635 0.51 -0.6
647,850 + ABID97_RS28635 0.78 -0.2

Or see this region's nucleotide sequence