Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27830

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27820 and ABID97_RS27825 overlap by 4 nucleotidesABID97_RS27825 and ABID97_RS27830 overlap by 46 nucleotidesABID97_RS27830 and ABID97_RS27835 are separated by 3 nucleotides ABID97_RS27820: ABID97_RS27820 - ABC transporter substrate-binding protein, at 484,365 to 485,564 _RS27820 ABID97_RS27825: ABID97_RS27825 - AMP-binding protein, at 485,561 to 486,232 _RS27825 ABID97_RS27830: ABID97_RS27830 - AMP-binding protein, at 486,187 to 487,341 _RS27830 ABID97_RS27835: ABID97_RS27835 - acetyl-CoA C-acyltransferase, at 487,345 to 488,529 _RS27835 Position (kb) 486 487 488Strain fitness (log2 ratio) -1 0 1at 485.332 kb on - strand, within ABID97_RS27820at 485.332 kb on - strand, within ABID97_RS27820at 485.443 kb on - strand, within ABID97_RS27820at 485.712 kb on - strand, within ABID97_RS27825at 485.861 kb on + strand, within ABID97_RS27825at 487.004 kb on - strand, within ABID97_RS27830at 487.004 kb on - strand, within ABID97_RS27830at 487.783 kb on + strand, within ABID97_RS27835at 487.784 kb on - strand, within ABID97_RS27835at 487.986 kb on + strand, within ABID97_RS27835

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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485,332 - ABID97_RS27820 0.81 -0.7
485,332 - ABID97_RS27820 0.81 +0.6
485,443 - ABID97_RS27820 0.90 +1.0
485,712 - ABID97_RS27825 0.22 +0.5
485,861 + ABID97_RS27825 0.45 +0.4
487,004 - ABID97_RS27830 0.71 -0.7
487,004 - ABID97_RS27830 0.71 -0.8
487,783 + ABID97_RS27835 0.37 +0.7
487,784 - ABID97_RS27835 0.37 +0.2
487,986 + ABID97_RS27835 0.54 -0.4

Or see this region's nucleotide sequence